Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.854e-6■■□□□ 12.1
U2AF1Q01081 TNKS1BP1-204ENST00000528882 4336 ntTSL 520.02■□□□□ 0.84e-6■■□□□ 12.1
U2AF1Q01081 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.794e-6■■□□□ 12.1
U2AF1Q01081 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC18.86■□□□□ 0.614e-6■■□□□ 12.1
U2AF1Q01081 PDLIM7-211ENST00000504318 597 ntTSL 318.75■□□□□ 0.594e-6■■□□□ 12.1
U2AF1Q01081 NCL-207ENST00000461347 3967 ntTSL 218.46■□□□□ 0.554e-16■■□□□ 12.1
U2AF1Q01081 NCL-201ENST00000322723 4034 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.084e-16■■□□□ 12.1
U2AF1Q01081 CCDC26-203ENST00000523151 1496 ntTSL 1 (best)10.04□□□□□ -0.84e-6■■□□□ 12.1
U2AF1Q01081 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC8.27□□□□□ -1.094e-6■■□□□ 12.1
U2AF1Q01081 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC7.87□□□□□ -1.154e-6■■□□□ 12.1
U2AF1Q01081 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.44e-6■■□□□ 12.1
U2AF1Q01081 GCLM-203ENST00000467772 625 ntTSL 34.01□□□□□ -1.774e-6■■□□□ 12.1
U2AF1Q01081 CCNH-208ENST00000510921 549 ntTSL 44□□□□□ -1.774e-6■■□□□ 12.1
U2AF1Q01081 CCNH-205ENST00000505587 1940 ntTSL 22.61□□□□□ -1.994e-6■■□□□ 12.1
U2AF1Q01081 MBNL2-206ENST00000469707 2574 ntTSL 1 (best)9.64□□□□□ -0.877e-7■■□□□ 12.1
U2AF1Q01081 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.097e-7■■□□□ 12.1
U2AF1Q01081 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC8.05□□□□□ -1.127e-7■■□□□ 12.1
U2AF1Q01081 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC7.73□□□□□ -1.177e-7■■□□□ 12.1
U2AF1Q01081 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC7.05□□□□□ -1.287e-7■■□□□ 12.1
U2AF1Q01081 CALCOCO1-203ENST00000546443 1523 ntTSL 1 (best)20.06■□□□□ 0.83e-6■■□□□ 12.1
U2AF1Q01081 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.553e-6■■□□□ 12.1
U2AF1Q01081 CALCOCO1-201ENST00000262059 5866 ntAPPRIS ALT1 TSL 2 BASIC13.2□□□□□ -0.33e-6■■□□□ 12.1
U2AF1Q01081 CALCOCO1-202ENST00000430117 2706 ntTSL 5 BASIC12.88□□□□□ -0.353e-6■■□□□ 12.1
U2AF1Q01081 CALCOCO1-210ENST00000548263 3888 ntTSL 1 (best) BASIC12.07□□□□□ -0.483e-6■■□□□ 12.1
U2AF1Q01081 LMO7-217ENST00000525914 874 ntTSL 519.18■□□□□ 0.669e-8■■□□□ 12.1
U2AF1Q01081 LMO7-214ENST00000524651 914 ntTSL 318.37■□□□□ 0.539e-8■■□□□ 12.1
U2AF1Q01081 LMO7-204ENST00000377499 3472 ntTSL 215.36■□□□□ 0.059e-8■■□□□ 12.1
U2AF1Q01081 LMO7-206ENST00000447038 3165 ntTSL 212.34□□□□□ -0.439e-8■■□□□ 12.1
U2AF1Q01081 LMO7-215ENST00000525107 536 ntTSL 54.62□□□□□ -1.679e-8■■□□□ 12.1
U2AF1Q01081 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC28.4■■■□□ 2.149e-12■■□□□ 12.1
U2AF1Q01081 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.999e-12■■□□□ 12.1
U2AF1Q01081 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC21.03■□□□□ 0.969e-12■■□□□ 12.1
U2AF1Q01081 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC19.82■□□□□ 0.769e-12■■□□□ 12.1
U2AF1Q01081 ADD1-207ENST00000446856 3745 ntTSL 5 BASIC18.09■□□□□ 0.499e-12■■□□□ 12.1
U2AF1Q01081 ADD1-219ENST00000514940 1332 ntTSL 515.75■□□□□ 0.119e-12■■□□□ 12.1
U2AF1Q01081 ADD1-221ENST00000536078 423 ntTSL 215.36■□□□□ 0.059e-12■■□□□ 12.1
U2AF1Q01081 ADD1-210ENST00000503455 3206 ntTSL 5 BASIC14.71□□□□□ -0.059e-12■■□□□ 12.1
U2AF1Q01081 ADD1-206ENST00000398129 3787 ntAPPRIS ALT1 TSL 2 BASIC14.28□□□□□ -0.129e-12■■□□□ 12.1
U2AF1Q01081 ADD1-217ENST00000513328 3107 ntTSL 5 BASIC13.62□□□□□ -0.239e-12■■□□□ 12.1
U2AF1Q01081 ADD1-209ENST00000503169 2394 ntTSL 210□□□□□ -0.819e-12■■□□□ 12.1
U2AF1Q01081 PIM1-201ENST00000373509 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.112e-6■■□□□ 12
U2AF1Q01081 INSIG2-203ENST00000467223 627 ntTSL 525.83■■□□□ 1.737e-7■■□□□ 12
U2AF1Q01081 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC21.23■□□□□ 0.997e-7■■□□□ 12
U2AF1Q01081 INSIG2-202ENST00000411929 574 ntTSL 220.92■□□□□ 0.947e-7■■□□□ 12
U2AF1Q01081 NFIA-202ENST00000371184 1348 ntTSL 5 BASIC15.76■□□□□ 0.117e-7■■□□□ 12
U2AF1Q01081 NFIA-210ENST00000479364 1010 ntTSL 515.76■□□□□ 0.117e-7■■□□□ 12
U2AF1Q01081 PRKAB2-201ENST00000254101 5417 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.017e-7■■□□□ 12
U2AF1Q01081 NFIA-207ENST00000403491 9487 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.127e-7■■□□□ 12
U2AF1Q01081 INSIG2-206ENST00000485520 3185 ntTSL 514.28□□□□□ -0.127e-7■■□□□ 12
U2AF1Q01081 NFIA-203ENST00000371185 1714 ntTSL 5 BASIC13.79□□□□□ -0.27e-7■■□□□ 12
U2AF1Q01081 NFIA-206ENST00000371191 1916 ntTSL 5 BASIC11.96□□□□□ -0.497e-7■■□□□ 12
U2AF1Q01081 NFIA-212ENST00000485903 1674 ntTSL 5 BASIC11.48□□□□□ -0.577e-7■■□□□ 12
U2AF1Q01081 INSIG2-204ENST00000471186 2100 ntTSL 511.27□□□□□ -0.67e-7■■□□□ 12
U2AF1Q01081 INSIG2-201ENST00000245787 2590 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.667e-7■■□□□ 12
U2AF1Q01081 NFIA-208ENST00000407417 2123 ntTSL 2 BASIC10.44□□□□□ -0.747e-7■■□□□ 12
U2AF1Q01081 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC7.89□□□□□ -1.157e-7■■□□□ 12
U2AF1Q01081 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC7.22□□□□□ -1.257e-7■■□□□ 12
U2AF1Q01081 NFIA-209ENST00000476646 730 ntTSL 36.06□□□□□ -1.447e-7■■□□□ 12
U2AF1Q01081 PRKAB2-203ENST00000496858 601 ntTSL 35.36□□□□□ -1.557e-7■■□□□ 12
U2AF1Q01081 INSIG2-207ENST00000488995 518 ntTSL 34.73□□□□□ -1.657e-7■■□□□ 12
U2AF1Q01081 EWSR1-205ENST00000360091 1289 ntTSL 526.18■■□□□ 1.783e-11■■□□□ 12
U2AF1Q01081 EWSR1-218ENST00000483629 1818 ntTSL 524.13■■□□□ 1.453e-11■■□□□ 12
U2AF1Q01081 EWSR1-215ENST00000469669 2630 ntTSL 220.76■□□□□ 0.913e-11■■□□□ 12
U2AF1Q01081 PABPC1L-207ENST00000372824 2223 ntTSL 2 BASIC16.98■□□□□ 0.313e-12■■□□□ 12
U2AF1Q01081 PABPC1L-205ENST00000372819 2100 ntTSL 2 BASIC16.29■□□□□ 0.23e-12■■□□□ 12
U2AF1Q01081 PABPC1L-209ENST00000465761 801 ntTSL 214.47□□□□□ -0.093e-12■■□□□ 12
U2AF1Q01081 PABPC1L-203ENST00000217075 670 ntTSL 5 BASIC12.33□□□□□ -0.443e-12■■□□□ 12
U2AF1Q01081 PABPC1L-212ENST00000479873 1178 ntTSL 211.63□□□□□ -0.553e-12■■□□□ 12
U2AF1Q01081 SRSF11-207ENST00000463116 735 ntTSL 33.34□□□□□ -1.876e-22■■□□□ 12
U2AF1Q01081 CTAGE5-216ENST00000556990 568 ntTSL 419.37■□□□□ 0.691e-14■■□□□ 12
U2AF1Q01081 CTAGE5-213ENST00000555716 558 ntTSL 48.87□□□□□ -0.991e-14■■□□□ 12
U2AF1Q01081 CTAGE5-211ENST00000554392 527 ntTSL 45.52□□□□□ -1.531e-14■■□□□ 12
U2AF1Q01081 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC35.24■■■■□ 3.236e-8■■□□□ 12
U2AF1Q01081 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC35.24■■■■□ 3.236e-8■■□□□ 12
U2AF1Q01081 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC34.25■■■■□ 3.076e-8■■□□□ 12
U2AF1Q01081 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.716e-8■■□□□ 12
U2AF1Q01081 ZFAND2B-214ENST00000464902 1851 ntTSL 230.3■■■□□ 2.446e-8■■□□□ 12
U2AF1Q01081 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC29.13■■■□□ 2.256e-8■■□□□ 12
U2AF1Q01081 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.976e-8■■□□□ 12
U2AF1Q01081 ZFAND2B-210ENST00000425849 484 ntTSL 317.72■□□□□ 0.436e-8■■□□□ 12
U2AF1Q01081 ZFAND2B-217ENST00000475533 971 ntTSL 516.26■□□□□ 0.196e-8■■□□□ 12
U2AF1Q01081 MGEA5-211ENST00000494347 712 ntTSL 26.07□□□□□ -1.443e-12■■□□□ 12
U2AF1Q01081 AGFG2-203ENST00000430857 915 ntTSL 534.66■■■■□ 3.143e-18■■□□□ 12
U2AF1Q01081 AGFG2-205ENST00000477022 1327 ntTSL 1 (best)26.9■■□□□ 1.93e-18■■□□□ 12
U2AF1Q01081 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.513e-18■■□□□ 12
U2AF1Q01081 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC24.66■■□□□ 1.541e-11■■□□□ 12
U2AF1Q01081 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.381e-11■■□□□ 12
U2AF1Q01081 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC23.4■■□□□ 1.341e-11■■□□□ 12
U2AF1Q01081 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC22.19■■□□□ 1.141e-11■■□□□ 12
U2AF1Q01081 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.091e-11■■□□□ 12
U2AF1Q01081 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC21.6■■□□□ 1.051e-11■■□□□ 12
U2AF1Q01081 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC21.36■■□□□ 1.011e-11■■□□□ 12
U2AF1Q01081 MAT2A-203ENST00000465151 583 ntTSL 213.63□□□□□ -0.231e-7■■□□□ 12
U2AF1Q01081 MAT2A-204ENST00000469221 691 ntTSL 29.34□□□□□ -0.911e-7■■□□□ 12
U2AF1Q01081 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC22.36■■□□□ 1.172e-10■■□□□ 12
U2AF1Q01081 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.752e-10■■□□□ 12
U2AF1Q01081 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC19.13■□□□□ 0.652e-12■■□□□ 12
U2AF1Q01081 EWSR1-217ENST00000483415 3231 ntTSL 1 (best)13.91□□□□□ -0.182e-12■■□□□ 12
U2AF1Q01081 EWSR1-211ENST00000437155 933 ntTSL 512.48□□□□□ -0.412e-12■■□□□ 12
U2AF1Q01081 EWSR1-214ENST00000455726 710 ntTSL 39.53□□□□□ -0.882e-12■■□□□ 12
Retrieved 100 of 10,096 protein–RNA pairs in 57.8 ms