Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ARID1B-227ENST00000637568 4610 ntTSL 512.9□□□□□ -0.342e-6■■■□□ 15.9
YBX3P16989 ARID1B-223ENST00000637015 5284 ntAPPRIS ALT2 TSL 512.58□□□□□ -0.42e-6■■■□□ 15.9
YBX3P16989 ARID1B-230ENST00000637810 5073 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.552e-6■■■□□ 15.9
YBX3P16989 ARID1B-210ENST00000635849 5830 ntAPPRIS ALT2 TSL 5 BASIC10.52□□□□□ -0.732e-6■■■□□ 15.9
YBX3P16989 ARID1B-221ENST00000636940 5910 ntTSL 510.26□□□□□ -0.772e-6■■■□□ 15.9
YBX3P16989 ARID1B-232ENST00000637904 5913 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.782e-6■■■□□ 15.9
YBX3P16989 ARID1B-212ENST00000635957 4048 ntAPPRIS ALT2 TSL 59.83□□□□□ -0.842e-6■■■□□ 15.9
YBX3P16989 ARID1B-214ENST00000636227 6386 ntTSL 59.44□□□□□ -0.92e-6■■■□□ 15.9
YBX3P16989 ARID1B-205ENST00000414678 6528 ntAPPRIS ALT2 TSL 58.97□□□□□ -0.972e-6■■■□□ 15.9
YBX3P16989 ARID1B-229ENST00000637741 3915 ntTSL 58.44□□□□□ -1.062e-6■■■□□ 15.9
YBX3P16989 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.97■□□□□ 0.475e-7■■■□□ 15.8
YBX3P16989 CMIP-211ENST00000621537 4000 ntTSL 5 BASIC14.29□□□□□ -0.125e-7■■■□□ 15.8
YBX3P16989 PHF19-202ENST00000373896 4241 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.291e-8■■■□□ 15.8
YBX3P16989 PHF19-214ENST00000616568 4159 ntTSL 1 (best) BASIC10.38□□□□□ -0.751e-8■■■□□ 15.8
YBX3P16989 RPL12-202ENST00000483598 344 ntTSL 27.05□□□□□ -1.281e-33■■■□□ 15.8
YBX3P16989 TMEM132D-AS1-203ENST00000512133 2271 ntTSL 1 (best)11.51□□□□□ -0.573e-8■■■□□ 15.8
YBX3P16989 TMEM132D-AS1-204ENST00000537367 531 ntTSL 1 (best) BASIC10.79□□□□□ -0.683e-8■■■□□ 15.8
YBX3P16989 TMEM132D-AS1-206ENST00000541320 440 ntTSL 1 (best) BASIC10.76□□□□□ -0.693e-8■■■□□ 15.8
YBX3P16989 TMEM132D-AS1-207ENST00000542535 442 ntTSL 1 (best) BASIC10.76□□□□□ -0.693e-8■■■□□ 15.8
YBX3P16989 TMEM132D-AS1-201ENST00000508925 627 ntTSL 1 (best)9.37□□□□□ -0.913e-8■■■□□ 15.8
YBX3P16989 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC3.75□□□□□ -1.813e-8■■■□□ 15.8
YBX3P16989 PPDPF-203ENST00000464438 373 ntTSL 224.08■■□□□ 1.452e-27■■■□□ 15.8
YBX3P16989 NBAS-201ENST00000281513 7281 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.93e-7■■■□□ 15.8
YBX3P16989 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.017e-7■■■□□ 15.8
YBX3P16989 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC15.83■□□□□ 0.129e-8■■■□□ 15.8
YBX3P16989 ACTN1-202ENST00000376839 2824 ntTSL 2 BASIC13.41□□□□□ -0.269e-8■■■□□ 15.8
YBX3P16989 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC13.34□□□□□ -0.279e-8■■■□□ 15.8
YBX3P16989 ACTN1-201ENST00000193403 3779 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.69e-8■■■□□ 15.8
YBX3P16989 ACTN1-203ENST00000394419 3464 ntAPPRIS ALT1 TSL 1 (best) BASIC10.78□□□□□ -0.689e-8■■■□□ 15.8
YBX3P16989 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC22.7■■□□□ 1.222e-7■■■□□ 15.8
YBX3P16989 RHOT1-209ENST00000581031 3013 ntTSL 1 (best)20.34■□□□□ 0.852e-7■■■□□ 15.8
YBX3P16989 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.41■□□□□ 0.72e-7■■■□□ 15.8
YBX3P16989 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.382e-7■■■□□ 15.8
YBX3P16989 RHOT1-215ENST00000583994 3289 ntTSL 216.71■□□□□ 0.272e-7■■■□□ 15.8
YBX3P16989 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.39■□□□□ 0.212e-7■■■□□ 15.8
YBX3P16989 RHOT1-210ENST00000581094 3231 ntTSL 2 BASIC11.42□□□□□ -0.582e-7■■■□□ 15.8
YBX3P16989 RHOT1-206ENST00000578205 2771 ntTSL 1 (best)5.22□□□□□ -1.572e-7■■■□□ 15.8
YBX3P16989 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC5.14□□□□□ -1.592e-7■■■□□ 15.8
YBX3P16989 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.745e-9■■■□□ 15.8
YBX3P16989 COQ8A-209ENST00000489044 941 ntTSL 324.41■■□□□ 1.54e-6■■■□□ 15.8
YBX3P16989 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.21e-8■■■□□ 15.8
YBX3P16989 RPL11P3-201ENST00000395256 523 ntBASIC6.13□□□□□ -1.431e-8■■■□□ 15.8
YBX3P16989 TJP1-211ENST00000561307 598 ntTSL 49.76□□□□□ -0.859e-8■■■□□ 15.8
YBX3P16989 FN3K-202ENST00000570734 2515 ntTSL 516.22■□□□□ 0.198e-9■■■□□ 15.8
YBX3P16989 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.125e-9■■■□□ 15.8
YBX3P16989 KIF2A-201ENST00000381103 3360 ntTSL 1 (best) BASIC10.93□□□□□ -0.665e-9■■■□□ 15.8
YBX3P16989 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC6.73□□□□□ -1.335e-9■■■□□ 15.8
YBX3P16989 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.47□□□□□ -1.695e-9■■■□□ 15.8
YBX3P16989 TSC1-205ENST00000475903 820 ntTSL 419.08■□□□□ 0.644e-9■■■□□ 15.8
YBX3P16989 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC18.54■□□□□ 0.564e-9■■■□□ 15.8
YBX3P16989 TSC1-206ENST00000490179 681 ntTSL 318.28■□□□□ 0.524e-9■■■□□ 15.8
YBX3P16989 TSC1-207ENST00000493467 2219 ntTSL 1 (best)9.8□□□□□ -0.844e-9■■■□□ 15.8
YBX3P16989 TSC1-208ENST00000545250 8310 ntTSL 5 BASIC9.05□□□□□ -0.964e-9■■■□□ 15.8
YBX3P16989 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.254e-9■■■□□ 15.8
YBX3P16989 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.254e-9■■■□□ 15.8
YBX3P16989 PSMD2-208ENST00000459910 676 ntTSL 529.72■■■□□ 2.354e-11■■■□□ 15.8
YBX3P16989 PSMD2-204ENST00000433010 942 ntTSL 328.27■■■□□ 2.124e-11■■■□□ 15.8
YBX3P16989 PSMD2-202ENST00000417952 721 ntTSL 326.32■■□□□ 1.84e-11■■■□□ 15.8
YBX3P16989 PSMD2-215ENST00000487475 910 ntTSL 223.37■■□□□ 1.334e-11■■■□□ 15.8
YBX3P16989 PSMD2-207ENST00000445558 825 ntTSL 515.1■□□□□ 0.014e-11■■■□□ 15.8
YBX3P16989 POLR1B-214ENST00000496238 587 ntTSL 425.07■■□□□ 1.62e-6■■■□□ 15.8
YBX3P16989 POLR1B-207ENST00000430769 572 ntTSL 424.67■■□□□ 1.542e-6■■■□□ 15.8
YBX3P16989 POLR1B-208ENST00000438748 555 ntTSL 415.54■□□□□ 0.082e-6■■■□□ 15.8
YBX3P16989 POLR1B-205ENST00000424062 558 ntTSL 414.42□□□□□ -0.12e-6■■■□□ 15.8
YBX3P16989 POLR1B-211ENST00000468475 569 ntTSL 410.79□□□□□ -0.682e-6■■■□□ 15.8
YBX3P16989 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.49■□□□□ 0.551e-8■■■□□ 15.8
YBX3P16989 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.341e-8■■■□□ 15.8
YBX3P16989 RPL4-202ENST00000561554 580 ntTSL 415.5■□□□□ 0.073e-57■■■□□ 15.8
YBX3P16989 KARS-211ENST00000569298 589 ntTSL 26.5□□□□□ -1.371e-8■■■□□ 15.8
YBX3P16989 POLR2A-206ENST00000576553 602 ntTSL 227.28■■□□□ 1.966e-10■■■□□ 15.8
YBX3P16989 PFAS-212ENST00000625942 396 ntTSL 5 BASIC21■□□□□ 0.951e-6■■■□□ 15.8
YBX3P16989 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.211e-6■■■□□ 15.8
YBX3P16989 PFAS-205ENST00000580356 4242 ntTSL 212.94□□□□□ -0.341e-6■■■□□ 15.8
YBX3P16989 PRRC2C-211ENST00000495585 5566 ntTSL 1 (best)5.18□□□□□ -1.581e-7■■■□□ 15.8
YBX3P16989 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.82■■□□□ 1.46e-8■■■□□ 15.8
YBX3P16989 TRAP1-201ENST00000246957 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.176e-8■■■□□ 15.8
YBX3P16989 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.625e-8■■■□□ 15.8
YBX3P16989 HNRNPL-212ENST00000601449 1918 ntTSL 519.11■□□□□ 0.655e-8■■■□□ 15.8
YBX3P16989 HNRNPL-210ENST00000600873 1633 ntTSL 5 BASIC16.34■□□□□ 0.215e-8■■■□□ 15.8
YBX3P16989 HNRNPL-202ENST00000388749 1952 ntTSL 512.72□□□□□ -0.375e-8■■■□□ 15.8
YBX3P16989 QARS-216ENST00000482248 887 ntTSL 517.02■□□□□ 0.325e-12■■■□□ 15.8
YBX3P16989 ATP5L-202ENST00000524422 720 ntTSL 3 BASIC11.03□□□□□ -0.642e-9■■■□□ 15.8
YBX3P16989 TK1-203ENST00000588734 1681 ntTSL 2 BASIC19.21■□□□□ 0.671e-7■■■□□ 15.8
YBX3P16989 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.661e-7■■■□□ 15.8
YBX3P16989 TMC6-222ENST00000592076 693 ntTSL 321.25■□□□□ 0.992e-10■■■□□ 15.8
YBX3P16989 RPL12-205ENST00000536368 499 ntTSL 1 (best) BASIC15.74■□□□□ 0.112e-24■■■□□ 15.8
YBX3P16989 ANAPC5-221ENST00000545218 1328 ntTSL 511.4□□□□□ -0.581e-7■■■□□ 15.8
YBX3P16989 LRPAP1-202ENST00000500728 7819 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.393e-8■■■□□ 15.8
YBX3P16989 ESYT2-204ENST00000483958 546 ntTSL 48.67□□□□□ -1.021e-7■■■□□ 15.8
YBX3P16989 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC24.93■■□□□ 1.581e-6■■■□□ 15.8
YBX3P16989 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.51e-6■■■□□ 15.8
YBX3P16989 MAF1-204ENST00000532522 1098 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.151e-6■■■□□ 15.8
YBX3P16989 MAF1-202ENST00000527058 868 ntTSL 315.99■□□□□ 0.151e-6■■■□□ 15.8
YBX3P16989 HAUS4-214ENST00000554516 983 ntTSL 223.82■■□□□ 1.44e-8■■■□□ 15.8
YBX3P16989 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC20.03■□□□□ 0.81e-6■■■□□ 15.8
YBX3P16989 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC17.78■□□□□ 0.441e-6■■■□□ 15.8
YBX3P16989 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC17.26■□□□□ 0.351e-6■■■□□ 15.8
YBX3P16989 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.261e-6■■■□□ 15.8
YBX3P16989 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC24.9■■□□□ 1.582e-6■■■□□ 15.8
YBX3P16989 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.092e-6■■■□□ 15.8
Retrieved 100 of 29,075 protein–RNA pairs in 662.4 ms