Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 AL691432.2-201ENST00000607222 2038 ntBASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USH1CQ9Y6N9 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 UNC93B3-201ENST00000308076 687 ntBASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 RARRES2P11-201ENST00000635158 484 ntBASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 MIR2861-201ENST00000636310 90 ntBASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USH1CQ9Y6N9 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.87■□□□□ 0.77
USH1CQ9Y6N9 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
USH1CQ9Y6N9 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USH1CQ9Y6N9 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
USH1CQ9Y6N9 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
USH1CQ9Y6N9 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USH1CQ9Y6N9 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
USH1CQ9Y6N9 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
USH1CQ9Y6N9 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USH1CQ9Y6N9 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USH1CQ9Y6N9 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
USH1CQ9Y6N9 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USH1CQ9Y6N9 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USH1CQ9Y6N9 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USH1CQ9Y6N9 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USH1CQ9Y6N9 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USH1CQ9Y6N9 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USH1CQ9Y6N9 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USH1CQ9Y6N9 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USH1CQ9Y6N9 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USH1CQ9Y6N9 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
USH1CQ9Y6N9 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USH1CQ9Y6N9 TSPY26P-201ENST00000476365 1326 ntBASIC19.86■□□□□ 0.77
USH1CQ9Y6N9 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USH1CQ9Y6N9 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USH1CQ9Y6N9 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USH1CQ9Y6N9 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
USH1CQ9Y6N9 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USH1CQ9Y6N9 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USH1CQ9Y6N9 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USH1CQ9Y6N9 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USH1CQ9Y6N9 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 AC024257.2-201ENST00000549699 147 ntBASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.85■□□□□ 0.77
USH1CQ9Y6N9 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms