Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.95■□□□□ 0.78
VPS13AQ96RL7 FDX1P1-201ENST00000449115 551 ntBASIC19.95■□□□□ 0.78
VPS13AQ96RL7 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS13AQ96RL7 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS13AQ96RL7 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS13AQ96RL7 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS13AQ96RL7 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.95■□□□□ 0.78
VPS13AQ96RL7 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VPS13AQ96RL7 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS13AQ96RL7 AL121956.5-201ENST00000625261 221 ntBASIC19.94■□□□□ 0.78
VPS13AQ96RL7 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS13AQ96RL7 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS13AQ96RL7 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VPS13AQ96RL7 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VPS13AQ96RL7 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS13AQ96RL7 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.94■□□□□ 0.78
VPS13AQ96RL7 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.94■□□□□ 0.78
VPS13AQ96RL7 AL691432.3-201ENST00000621860 400 ntBASIC19.94■□□□□ 0.78
VPS13AQ96RL7 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VPS13AQ96RL7 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VPS13AQ96RL7 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
VPS13AQ96RL7 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS13AQ96RL7 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS13AQ96RL7 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.94■□□□□ 0.78
VPS13AQ96RL7 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC19.93■□□□□ 0.78
VPS13AQ96RL7 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.93■□□□□ 0.78
VPS13AQ96RL7 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.93■□□□□ 0.78
VPS13AQ96RL7 EGLN1P1-201ENST00000531623 762 ntBASIC19.93■□□□□ 0.78
VPS13AQ96RL7 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS13AQ96RL7 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS13AQ96RL7 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.93■□□□□ 0.78
VPS13AQ96RL7 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS13AQ96RL7 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS13AQ96RL7 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS13AQ96RL7 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
VPS13AQ96RL7 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.93■□□□□ 0.78
VPS13AQ96RL7 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS13AQ96RL7 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS13AQ96RL7 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS13AQ96RL7 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.93■□□□□ 0.78
VPS13AQ96RL7 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC19.93■□□□□ 0.78
VPS13AQ96RL7 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.93■□□□□ 0.78
VPS13AQ96RL7 B3GAT3P1-201ENST00000471720 806 ntBASIC19.93■□□□□ 0.78
VPS13AQ96RL7 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS13AQ96RL7 AL138966.2-201ENST00000621997 464 ntBASIC19.93■□□□□ 0.78
VPS13AQ96RL7 AC011558.1-201ENST00000623459 338 ntBASIC19.93■□□□□ 0.78
VPS13AQ96RL7 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 AC128688.1-201ENST00000487626 519 ntBASIC19.92■□□□□ 0.78
VPS13AQ96RL7 AP002982.1-201ENST00000492365 877 ntBASIC19.92■□□□□ 0.78
VPS13AQ96RL7 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 TSPY21P-201ENST00000433481 731 ntBASIC19.92■□□□□ 0.78
VPS13AQ96RL7 TSPY23P-201ENST00000440136 739 ntBASIC19.92■□□□□ 0.78
VPS13AQ96RL7 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS13AQ96RL7 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 AL671883.3-201ENST00000603274 991 ntBASIC19.91■□□□□ 0.78
VPS13AQ96RL7 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 PCED1CP-201ENST00000419887 785 ntBASIC19.91■□□□□ 0.78
VPS13AQ96RL7 PTK2-216ENST00000519881 863 ntTSL 3 BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.91■□□□□ 0.78
VPS13AQ96RL7 AC006538.3-201ENST00000612495 578 ntBASIC19.91■□□□□ 0.78
VPS13AQ96RL7 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms