Protein–RNA interactions for Protein: Q9Y5Y9

SCN10A, Sodium channel protein type 10 subunit alpha, humanhuman

Predictions only

Length 1,956 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN10AQ9Y5Y9 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SCN10AQ9Y5Y9 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SCN10AQ9Y5Y9 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
SCN10AQ9Y5Y9 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
SCN10AQ9Y5Y9 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC22.14■■□□□ 1.14
SCN10AQ9Y5Y9 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC22.14■■□□□ 1.14
SCN10AQ9Y5Y9 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC22.14■■□□□ 1.14
SCN10AQ9Y5Y9 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
SCN10AQ9Y5Y9 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
SCN10AQ9Y5Y9 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.14
SCN10AQ9Y5Y9 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.14
SCN10AQ9Y5Y9 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
SCN10AQ9Y5Y9 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
SCN10AQ9Y5Y9 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SCN10AQ9Y5Y9 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC22.14■■□□□ 1.13
SCN10AQ9Y5Y9 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC22.14■■□□□ 1.13
SCN10AQ9Y5Y9 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC22.14■■□□□ 1.13
SCN10AQ9Y5Y9 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
SCN10AQ9Y5Y9 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC22.14■■□□□ 1.13
SCN10AQ9Y5Y9 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
SCN10AQ9Y5Y9 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SCN10AQ9Y5Y9 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SCN10AQ9Y5Y9 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC22.14■■□□□ 1.13
SCN10AQ9Y5Y9 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
SCN10AQ9Y5Y9 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
SCN10AQ9Y5Y9 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
SCN10AQ9Y5Y9 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SCN10AQ9Y5Y9 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
SCN10AQ9Y5Y9 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
SCN10AQ9Y5Y9 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC22.13■■□□□ 1.13
SCN10AQ9Y5Y9 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC22.13■■□□□ 1.13
SCN10AQ9Y5Y9 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC22.13■■□□□ 1.13
SCN10AQ9Y5Y9 RBM42-202ENST00000586618 771 ntTSL 3 BASIC22.13■■□□□ 1.13
SCN10AQ9Y5Y9 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
SCN10AQ9Y5Y9 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
SCN10AQ9Y5Y9 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC22.13■■□□□ 1.13
SCN10AQ9Y5Y9 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC22.13■■□□□ 1.13
SCN10AQ9Y5Y9 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC22.13■■□□□ 1.13
SCN10AQ9Y5Y9 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SCN10AQ9Y5Y9 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SCN10AQ9Y5Y9 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC22.12■■□□□ 1.13
SCN10AQ9Y5Y9 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC22.12■■□□□ 1.13
SCN10AQ9Y5Y9 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SCN10AQ9Y5Y9 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC22.12■■□□□ 1.13
SCN10AQ9Y5Y9 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
SCN10AQ9Y5Y9 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SCN10AQ9Y5Y9 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC22.12■■□□□ 1.13
SCN10AQ9Y5Y9 CYP2D8P-201ENST00000433633 1490 ntBASIC22.12■■□□□ 1.13
SCN10AQ9Y5Y9 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
SCN10AQ9Y5Y9 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC22.12■■□□□ 1.13
SCN10AQ9Y5Y9 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
SCN10AQ9Y5Y9 CRAT-202ENST00000393384 973 ntTSL 2 BASIC22.12■■□□□ 1.13
SCN10AQ9Y5Y9 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC22.12■■□□□ 1.13
SCN10AQ9Y5Y9 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 AC121338.2-201ENST00000622535 1744 ntBASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 AC005521.1-201ENST00000393351 872 ntBASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC22.11■■□□□ 1.13
SCN10AQ9Y5Y9 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 AC026271.3-201ENST00000571884 352 ntBASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 AC010947.1-201ENST00000623454 693 ntBASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 FEM1AP4-201ENST00000443167 1987 ntBASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 FITM1-202ENST00000559294 800 ntBASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC22.1■■□□□ 1.13
SCN10AQ9Y5Y9 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC22.09■■□□□ 1.13
SCN10AQ9Y5Y9 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC22.09■■□□□ 1.13
SCN10AQ9Y5Y9 KRT18P57-201ENST00000443599 1254 ntBASIC22.09■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms