Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC24.46■■□□□ 1.51
ZC3H4Q9UPT8 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
ZC3H4Q9UPT8 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
ZC3H4Q9UPT8 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
ZC3H4Q9UPT8 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC24.46■■□□□ 1.51
ZC3H4Q9UPT8 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC24.46■■□□□ 1.51
ZC3H4Q9UPT8 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
ZC3H4Q9UPT8 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
ZC3H4Q9UPT8 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC24.46■■□□□ 1.51
ZC3H4Q9UPT8 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
ZC3H4Q9UPT8 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC24.45■■□□□ 1.51
ZC3H4Q9UPT8 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
ZC3H4Q9UPT8 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC24.45■■□□□ 1.5
ZC3H4Q9UPT8 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC24.45■■□□□ 1.5
ZC3H4Q9UPT8 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
ZC3H4Q9UPT8 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
ZC3H4Q9UPT8 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
ZC3H4Q9UPT8 RNF152P1-201ENST00000397754 604 ntBASIC24.45■■□□□ 1.5
ZC3H4Q9UPT8 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC24.45■■□□□ 1.5
ZC3H4Q9UPT8 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC24.45■■□□□ 1.5
ZC3H4Q9UPT8 PP7080-204ENST00000510714 601 ntTSL 3 BASIC24.45■■□□□ 1.5
ZC3H4Q9UPT8 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC24.45■■□□□ 1.5
ZC3H4Q9UPT8 VPS72-207ENST00000640458 689 ntTSL 5 BASIC24.45■■□□□ 1.5
ZC3H4Q9UPT8 AC010542.4-201ENST00000563151 1910 ntBASIC24.45■■□□□ 1.5
ZC3H4Q9UPT8 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
ZC3H4Q9UPT8 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC24.45■■□□□ 1.5
ZC3H4Q9UPT8 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
ZC3H4Q9UPT8 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC24.44■■□□□ 1.5
ZC3H4Q9UPT8 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
ZC3H4Q9UPT8 MESTP1-201ENST00000404287 994 ntBASIC24.44■■□□□ 1.5
ZC3H4Q9UPT8 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC24.44■■□□□ 1.5
ZC3H4Q9UPT8 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC24.44■■□□□ 1.5
ZC3H4Q9UPT8 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
ZC3H4Q9UPT8 AC026471.6-201ENST00000622954 1905 ntBASIC24.44■■□□□ 1.5
ZC3H4Q9UPT8 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC24.44■■□□□ 1.5
ZC3H4Q9UPT8 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
ZC3H4Q9UPT8 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
ZC3H4Q9UPT8 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
ZC3H4Q9UPT8 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
ZC3H4Q9UPT8 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
ZC3H4Q9UPT8 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
ZC3H4Q9UPT8 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC24.43■■□□□ 1.5
ZC3H4Q9UPT8 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC24.43■■□□□ 1.5
ZC3H4Q9UPT8 FAM207BP-201ENST00000447172 505 ntBASIC24.43■■□□□ 1.5
ZC3H4Q9UPT8 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC24.43■■□□□ 1.5
ZC3H4Q9UPT8 AL121956.5-201ENST00000625261 221 ntBASIC24.43■■□□□ 1.5
ZC3H4Q9UPT8 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC24.43■■□□□ 1.5
ZC3H4Q9UPT8 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC24.43■■□□□ 1.5
ZC3H4Q9UPT8 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
ZC3H4Q9UPT8 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
ZC3H4Q9UPT8 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
ZC3H4Q9UPT8 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
ZC3H4Q9UPT8 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
ZC3H4Q9UPT8 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
ZC3H4Q9UPT8 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
ZC3H4Q9UPT8 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC24.42■■□□□ 1.5
ZC3H4Q9UPT8 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
ZC3H4Q9UPT8 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
ZC3H4Q9UPT8 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
ZC3H4Q9UPT8 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC24.42■■□□□ 1.5
ZC3H4Q9UPT8 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
ZC3H4Q9UPT8 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC24.42■■□□□ 1.5
ZC3H4Q9UPT8 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
ZC3H4Q9UPT8 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC24.42■■□□□ 1.5
ZC3H4Q9UPT8 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
ZC3H4Q9UPT8 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
ZC3H4Q9UPT8 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
ZC3H4Q9UPT8 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
ZC3H4Q9UPT8 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
ZC3H4Q9UPT8 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
ZC3H4Q9UPT8 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
ZC3H4Q9UPT8 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
ZC3H4Q9UPT8 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
ZC3H4Q9UPT8 HMGA1P5-201ENST00000412453 271 ntBASIC24.41■■□□□ 1.5
ZC3H4Q9UPT8 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC24.41■■□□□ 1.5
ZC3H4Q9UPT8 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC24.41■■□□□ 1.5
ZC3H4Q9UPT8 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC24.41■■□□□ 1.5
ZC3H4Q9UPT8 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC24.41■■□□□ 1.5
ZC3H4Q9UPT8 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
ZC3H4Q9UPT8 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
ZC3H4Q9UPT8 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
ZC3H4Q9UPT8 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC24.41■■□□□ 1.5
ZC3H4Q9UPT8 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
ZC3H4Q9UPT8 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC24.4■■□□□ 1.5
ZC3H4Q9UPT8 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC24.4■■□□□ 1.5
ZC3H4Q9UPT8 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
ZC3H4Q9UPT8 PRR31-201ENST00000371629 978 ntTSL 2 BASIC24.4■■□□□ 1.5
ZC3H4Q9UPT8 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
ZC3H4Q9UPT8 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC24.4■■□□□ 1.5
ZC3H4Q9UPT8 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
ZC3H4Q9UPT8 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
ZC3H4Q9UPT8 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC24.4■■□□□ 1.5
ZC3H4Q9UPT8 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
ZC3H4Q9UPT8 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC24.4■■□□□ 1.5
ZC3H4Q9UPT8 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
ZC3H4Q9UPT8 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
ZC3H4Q9UPT8 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
ZC3H4Q9UPT8 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
ZC3H4Q9UPT8 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC24.4■■□□□ 1.5
ZC3H4Q9UPT8 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC24.4■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms