Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 AC055733.4-201ENST00000638462 1354 ntBASIC19.91■□□□□ 0.78
TRIM4Q9C037 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM4Q9C037 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM4Q9C037 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM4Q9C037 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
TRIM4Q9C037 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM4Q9C037 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM4Q9C037 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM4Q9C037 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM4Q9C037 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM4Q9C037 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM4Q9C037 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM4Q9C037 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM4Q9C037 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM4Q9C037 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM4Q9C037 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM4Q9C037 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.9■□□□□ 0.78
TRIM4Q9C037 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.9■□□□□ 0.78
TRIM4Q9C037 AC079140.4-201ENST00000507448 529 ntBASIC19.9■□□□□ 0.78
TRIM4Q9C037 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM4Q9C037 DUX4L16-201ENST00000555130 1264 ntBASIC19.9■□□□□ 0.78
TRIM4Q9C037 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM4Q9C037 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM4Q9C037 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM4Q9C037 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM4Q9C037 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM4Q9C037 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
TRIM4Q9C037 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM4Q9C037 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM4Q9C037 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM4Q9C037 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
TRIM4Q9C037 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
TRIM4Q9C037 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM4Q9C037 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM4Q9C037 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
TRIM4Q9C037 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM4Q9C037 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM4Q9C037 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.89■□□□□ 0.77
TRIM4Q9C037 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM4Q9C037 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM4Q9C037 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.89■□□□□ 0.77
TRIM4Q9C037 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.89■□□□□ 0.77
TRIM4Q9C037 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM4Q9C037 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM4Q9C037 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM4Q9C037 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
TRIM4Q9C037 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM4Q9C037 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
TRIM4Q9C037 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.88■□□□□ 0.77
TRIM4Q9C037 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM4Q9C037 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM4Q9C037 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM4Q9C037 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.88■□□□□ 0.77
TRIM4Q9C037 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.88■□□□□ 0.77
TRIM4Q9C037 DUSP5P2-201ENST00000426873 1033 ntBASIC19.88■□□□□ 0.77
TRIM4Q9C037 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.88■□□□□ 0.77
TRIM4Q9C037 AC105036.2-201ENST00000569468 176 ntBASIC19.88■□□□□ 0.77
TRIM4Q9C037 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
TRIM4Q9C037 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM4Q9C037 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM4Q9C037 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM4Q9C037 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM4Q9C037 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM4Q9C037 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM4Q9C037 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
TRIM4Q9C037 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.88■□□□□ 0.77
TRIM4Q9C037 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.88■□□□□ 0.77
TRIM4Q9C037 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
TRIM4Q9C037 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
TRIM4Q9C037 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM4Q9C037 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM4Q9C037 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM4Q9C037 PCDHAC2-203ENST00000615316 3011 ntBASIC19.87■□□□□ 0.77
TRIM4Q9C037 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM4Q9C037 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
TRIM4Q9C037 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM4Q9C037 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM4Q9C037 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
TRIM4Q9C037 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.87■□□□□ 0.77
TRIM4Q9C037 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM4Q9C037 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM4Q9C037 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.87■□□□□ 0.77
TRIM4Q9C037 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.87■□□□□ 0.77
TRIM4Q9C037 AF201337.1-201ENST00000520239 748 ntBASIC19.87■□□□□ 0.77
TRIM4Q9C037 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.87■□□□□ 0.77
TRIM4Q9C037 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM4Q9C037 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM4Q9C037 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
TRIM4Q9C037 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM4Q9C037 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM4Q9C037 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM4Q9C037 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM4Q9C037 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM4Q9C037 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM4Q9C037 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM4Q9C037 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.86■□□□□ 0.77
TRIM4Q9C037 AC098818.2-201ENST00000564925 2320 ntBASIC19.86■□□□□ 0.77
TRIM4Q9C037 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.86■□□□□ 0.77
TRIM4Q9C037 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
TRIM4Q9C037 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms