Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC14.68□□□□□ -0.06
PRKDCP78527 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PRKDCP78527 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PRKDCP78527 AL022342.1-201ENST00000400363 863 ntBASIC14.68□□□□□ -0.06
PRKDCP78527 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC14.68□□□□□ -0.06
PRKDCP78527 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC14.68□□□□□ -0.06
PRKDCP78527 AL356652.1-201ENST00000615962 565 ntBASIC14.68□□□□□ -0.06
PRKDCP78527 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PRKDCP78527 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PRKDCP78527 PKM-204ENST00000449901 2526 ntTSL 2 BASIC14.67□□□□□ -0.06
PRKDCP78527 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC14.67□□□□□ -0.06
PRKDCP78527 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PRKDCP78527 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
PRKDCP78527 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
PRKDCP78527 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PRKDCP78527 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PRKDCP78527 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC14.67□□□□□ -0.06
PRKDCP78527 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PRKDCP78527 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC14.67□□□□□ -0.06
PRKDCP78527 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PRKDCP78527 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PRKDCP78527 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
PRKDCP78527 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PRKDCP78527 EMBP1-201ENST00000458200 901 ntBASIC14.67□□□□□ -0.06
PRKDCP78527 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PRKDCP78527 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PRKDCP78527 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC14.66□□□□□ -0.06
PRKDCP78527 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC14.66□□□□□ -0.06
PRKDCP78527 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC14.66□□□□□ -0.06
PRKDCP78527 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PRKDCP78527 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PRKDCP78527 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC14.66□□□□□ -0.06
PRKDCP78527 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PRKDCP78527 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PRKDCP78527 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC14.66□□□□□ -0.06
PRKDCP78527 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PRKDCP78527 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC14.66□□□□□ -0.06
PRKDCP78527 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC14.66□□□□□ -0.06
PRKDCP78527 LINC02084-201ENST00000606069 1096 ntBASIC14.66□□□□□ -0.06
PRKDCP78527 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PRKDCP78527 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
PRKDCP78527 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PRKDCP78527 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
PRKDCP78527 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PRKDCP78527 AC097488.1-201ENST00000507834 756 ntBASIC14.66□□□□□ -0.06
PRKDCP78527 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC14.66□□□□□ -0.06
PRKDCP78527 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PRKDCP78527 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PRKDCP78527 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PRKDCP78527 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PRKDCP78527 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PRKDCP78527 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC14.65□□□□□ -0.06
PRKDCP78527 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC14.65□□□□□ -0.06
PRKDCP78527 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC14.65□□□□□ -0.06
PRKDCP78527 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC14.65□□□□□ -0.06
PRKDCP78527 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PRKDCP78527 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PRKDCP78527 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC14.65□□□□□ -0.06
PRKDCP78527 AC008040.2-201ENST00000461049 708 ntBASIC14.65□□□□□ -0.06
PRKDCP78527 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC14.65□□□□□ -0.06
PRKDCP78527 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PRKDCP78527 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC14.65□□□□□ -0.06
PRKDCP78527 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PRKDCP78527 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
PRKDCP78527 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC14.65□□□□□ -0.06
PRKDCP78527 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC14.65□□□□□ -0.06
PRKDCP78527 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC14.65□□□□□ -0.06
PRKDCP78527 PRR29-207ENST00000580752 458 ntTSL 3 BASIC14.65□□□□□ -0.06
PRKDCP78527 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PRKDCP78527 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC14.65□□□□□ -0.06
PRKDCP78527 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PRKDCP78527 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PRKDCP78527 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC14.65□□□□□ -0.06
PRKDCP78527 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PRKDCP78527 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PRKDCP78527 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PRKDCP78527 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
PRKDCP78527 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC14.64□□□□□ -0.07
PRKDCP78527 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
PRKDCP78527 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC14.64□□□□□ -0.07
PRKDCP78527 AC007663.1-201ENST00000438948 1240 ntBASIC14.64□□□□□ -0.07
PRKDCP78527 ETFA-216ENST00000560726 942 ntTSL 3 BASIC14.64□□□□□ -0.07
PRKDCP78527 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PRKDCP78527 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC14.64□□□□□ -0.07
PRKDCP78527 AC092119.3-201ENST00000612618 583 ntBASIC14.64□□□□□ -0.07
PRKDCP78527 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
PRKDCP78527 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PRKDCP78527 SDHD-206ENST00000528182 754 ntTSL 3 BASIC14.64□□□□□ -0.07
PRKDCP78527 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
PRKDCP78527 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PRKDCP78527 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
PRKDCP78527 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PRKDCP78527 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PRKDCP78527 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC14.64□□□□□ -0.07
PRKDCP78527 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC14.64□□□□□ -0.07
PRKDCP78527 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC14.64□□□□□ -0.07
PRKDCP78527 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC14.64□□□□□ -0.07
PRKDCP78527 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PRKDCP78527 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC14.64□□□□□ -0.07
PRKDCP78527 AL023803.3-201ENST00000615559 522 ntBASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms