Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.47■■□□□ 1.03
VCPP55072 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.47■■□□□ 1.03
VCPP55072 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.47■■□□□ 1.03
VCPP55072 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VCPP55072 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
VCPP55072 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.47■■□□□ 1.03
VCPP55072 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
VCPP55072 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.47■■□□□ 1.03
VCPP55072 GABARAPL3-202ENST00000624044 1851 ntBASIC21.47■■□□□ 1.03
VCPP55072 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.47■■□□□ 1.03
VCPP55072 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.47■■□□□ 1.03
VCPP55072 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
VCPP55072 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.46■■□□□ 1.03
VCPP55072 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
VCPP55072 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
VCPP55072 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VCPP55072 AC073314.1-201ENST00000568729 2216 ntBASIC21.46■■□□□ 1.03
VCPP55072 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VCPP55072 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
VCPP55072 AL355472.2-201ENST00000422958 438 ntBASIC21.46■■□□□ 1.03
VCPP55072 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.46■■□□□ 1.03
VCPP55072 TSPY15P-201ENST00000457163 923 ntBASIC21.46■■□□□ 1.03
VCPP55072 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
VCPP55072 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.46■■□□□ 1.03
VCPP55072 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.46■■□□□ 1.03
VCPP55072 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
VCPP55072 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
VCPP55072 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.46■■□□□ 1.03
VCPP55072 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VCPP55072 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VCPP55072 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VCPP55072 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VCPP55072 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VCPP55072 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VCPP55072 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
VCPP55072 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
VCPP55072 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VCPP55072 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VCPP55072 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.45■■□□□ 1.02
VCPP55072 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.45■■□□□ 1.02
VCPP55072 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.45■■□□□ 1.02
VCPP55072 NT5C-211ENST00000582170 653 ntTSL 3 BASIC21.45■■□□□ 1.02
VCPP55072 AC233702.5-201ENST00000584107 538 ntBASIC21.45■■□□□ 1.02
VCPP55072 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
VCPP55072 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
VCPP55072 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
VCPP55072 KRT17P2-201ENST00000300992 1314 ntBASIC21.45■■□□□ 1.02
VCPP55072 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
VCPP55072 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VCPP55072 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VCPP55072 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VCPP55072 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
VCPP55072 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
VCPP55072 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VCPP55072 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.44■■□□□ 1.02
VCPP55072 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
VCPP55072 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
VCPP55072 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC21.44■■□□□ 1.02
VCPP55072 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VCPP55072 AC012618.2-201ENST00000428058 849 ntBASIC21.44■■□□□ 1.02
VCPP55072 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.44■■□□□ 1.02
VCPP55072 PNMA6B-201ENST00000538162 1200 ntBASIC21.44■■□□□ 1.02
VCPP55072 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.44■■□□□ 1.02
VCPP55072 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
VCPP55072 AC069544.1-201ENST00000609399 999 ntBASIC21.44■■□□□ 1.02
VCPP55072 AC097493.4-201ENST00000641197 219 ntBASIC21.44■■□□□ 1.02
VCPP55072 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
VCPP55072 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
VCPP55072 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
VCPP55072 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
VCPP55072 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
VCPP55072 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.44■■□□□ 1.02
VCPP55072 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.44■■□□□ 1.02
VCPP55072 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
VCPP55072 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VCPP55072 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VCPP55072 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
VCPP55072 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VCPP55072 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VCPP55072 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
VCPP55072 ARMC10P1-201ENST00000313754 855 ntBASIC21.43■■□□□ 1.02
VCPP55072 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VCPP55072 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
VCPP55072 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VCPP55072 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VCPP55072 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
VCPP55072 AC012306.2-201ENST00000609350 630 ntBASIC21.43■■□□□ 1.02
VCPP55072 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
VCPP55072 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
VCPP55072 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VCPP55072 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
VCPP55072 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VCPP55072 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
VCPP55072 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VCPP55072 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VCPP55072 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VCPP55072 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
VCPP55072 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VCPP55072 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.42■■□□□ 1.02
VCPP55072 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms