Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCDHA3Q9Y5H8 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.01■□□□□ 0.95
PCDHA3Q9Y5H8 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCDHA3Q9Y5H8 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
PCDHA3Q9Y5H8 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PCDHA3Q9Y5H8 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.01■□□□□ 0.95
PCDHA3Q9Y5H8 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.01■□□□□ 0.95
PCDHA3Q9Y5H8 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PCDHA3Q9Y5H8 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PCDHA3Q9Y5H8 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCDHA3Q9Y5H8 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
PCDHA3Q9Y5H8 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC21.01■□□□□ 0.95
PCDHA3Q9Y5H8 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCDHA3Q9Y5H8 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 AC013268.1-206ENST00000638368 961 ntBASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 AC112229.1-201ENST00000639295 961 ntBASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
PCDHA3Q9Y5H8 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
PCDHA3Q9Y5H8 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
PCDHA3Q9Y5H8 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.99■□□□□ 0.95
PCDHA3Q9Y5H8 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
PCDHA3Q9Y5H8 RNF165-205ENST00000588679 2904 ntBASIC20.99■□□□□ 0.95
PCDHA3Q9Y5H8 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCDHA3Q9Y5H8 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCDHA3Q9Y5H8 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCDHA3Q9Y5H8 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCDHA3Q9Y5H8 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.99■□□□□ 0.95
PCDHA3Q9Y5H8 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PCDHA3Q9Y5H8 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.99■□□□□ 0.95
PCDHA3Q9Y5H8 PTBP1P-201ENST00000554374 1601 ntBASIC20.99■□□□□ 0.95
PCDHA3Q9Y5H8 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.99■□□□□ 0.95
PCDHA3Q9Y5H8 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PCDHA3Q9Y5H8 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCDHA3Q9Y5H8 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCDHA3Q9Y5H8 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 KRT18P11-201ENST00000435214 1283 ntBASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 MIR6821-201ENST00000617625 74 ntBASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
PCDHA3Q9Y5H8 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHA3Q9Y5H8 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHA3Q9Y5H8 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHA3Q9Y5H8 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHA3Q9Y5H8 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.97■□□□□ 0.95
PCDHA3Q9Y5H8 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHA3Q9Y5H8 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.97■□□□□ 0.95
PCDHA3Q9Y5H8 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHA3Q9Y5H8 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHA3Q9Y5H8 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.97■□□□□ 0.95
PCDHA3Q9Y5H8 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
PCDHA3Q9Y5H8 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.97■□□□□ 0.95
PCDHA3Q9Y5H8 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.97■□□□□ 0.95
PCDHA3Q9Y5H8 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
PCDHA3Q9Y5H8 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.97■□□□□ 0.95
PCDHA3Q9Y5H8 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHA3Q9Y5H8 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
PCDHA3Q9Y5H8 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHA3Q9Y5H8 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHA3Q9Y5H8 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms