Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HPS4Q9NQG7 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HPS4Q9NQG7 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.84■□□□□ 0.93
HPS4Q9NQG7 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.84■□□□□ 0.93
HPS4Q9NQG7 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.84■□□□□ 0.93
HPS4Q9NQG7 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.84■□□□□ 0.93
HPS4Q9NQG7 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.84■□□□□ 0.93
HPS4Q9NQG7 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.84■□□□□ 0.93
HPS4Q9NQG7 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
HPS4Q9NQG7 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.84■□□□□ 0.93
HPS4Q9NQG7 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HPS4Q9NQG7 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HPS4Q9NQG7 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HPS4Q9NQG7 AC244015.2-201ENST00000616358 1861 ntBASIC20.84■□□□□ 0.93
HPS4Q9NQG7 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
HPS4Q9NQG7 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
HPS4Q9NQG7 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HPS4Q9NQG7 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
HPS4Q9NQG7 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HPS4Q9NQG7 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.83■□□□□ 0.93
HPS4Q9NQG7 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
HPS4Q9NQG7 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
HPS4Q9NQG7 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
HPS4Q9NQG7 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
HPS4Q9NQG7 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
HPS4Q9NQG7 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
HPS4Q9NQG7 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HPS4Q9NQG7 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
HPS4Q9NQG7 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.83■□□□□ 0.93
HPS4Q9NQG7 REXO1L12P-201ENST00000622156 912 ntBASIC20.83■□□□□ 0.93
HPS4Q9NQG7 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HPS4Q9NQG7 AL049637.2-201ENST00000641778 930 ntBASIC20.83■□□□□ 0.93
HPS4Q9NQG7 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.83■□□□□ 0.93
HPS4Q9NQG7 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
HPS4Q9NQG7 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.83■□□□□ 0.92
HPS4Q9NQG7 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HPS4Q9NQG7 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
HPS4Q9NQG7 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HPS4Q9NQG7 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HPS4Q9NQG7 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HPS4Q9NQG7 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
HPS4Q9NQG7 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.82■□□□□ 0.92
HPS4Q9NQG7 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
HPS4Q9NQG7 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.82■□□□□ 0.92
HPS4Q9NQG7 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
HPS4Q9NQG7 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.82■□□□□ 0.92
HPS4Q9NQG7 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.82■□□□□ 0.92
HPS4Q9NQG7 AC211429.1-201ENST00000415277 523 ntBASIC20.82■□□□□ 0.92
HPS4Q9NQG7 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
HPS4Q9NQG7 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.82■□□□□ 0.92
HPS4Q9NQG7 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.82■□□□□ 0.92
HPS4Q9NQG7 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HPS4Q9NQG7 FBXW4P1-201ENST00000426721 2239 ntBASIC20.82■□□□□ 0.92
HPS4Q9NQG7 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HPS4Q9NQG7 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 AC027702.1-201ENST00000563810 1770 ntBASIC20.81■□□□□ 0.92
HPS4Q9NQG7 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HPS4Q9NQG7 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HPS4Q9NQG7 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.8■□□□□ 0.92
HPS4Q9NQG7 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HPS4Q9NQG7 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.8■□□□□ 0.92
HPS4Q9NQG7 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
HPS4Q9NQG7 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.8■□□□□ 0.92
HPS4Q9NQG7 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.8■□□□□ 0.92
HPS4Q9NQG7 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HPS4Q9NQG7 BX088651.1-201ENST00000540551 451 ntBASIC20.8■□□□□ 0.92
HPS4Q9NQG7 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
HPS4Q9NQG7 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.8■□□□□ 0.92
HPS4Q9NQG7 AC113410.3-201ENST00000623366 203 ntBASIC20.8■□□□□ 0.92
HPS4Q9NQG7 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HPS4Q9NQG7 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HPS4Q9NQG7 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.8■□□□□ 0.92
HPS4Q9NQG7 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
HPS4Q9NQG7 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.8■□□□□ 0.92
HPS4Q9NQG7 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.8■□□□□ 0.92
HPS4Q9NQG7 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
HPS4Q9NQG7 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.8■□□□□ 0.92
HPS4Q9NQG7 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.79■□□□□ 0.92
HPS4Q9NQG7 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.79■□□□□ 0.92
HPS4Q9NQG7 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms