Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC17.72■□□□□ 0.43
VRK1Q99986 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC17.72■□□□□ 0.43
VRK1Q99986 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.72■□□□□ 0.43
VRK1Q99986 AC098934.4-201ENST00000564127 592 ntBASIC17.72■□□□□ 0.43
VRK1Q99986 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
VRK1Q99986 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VRK1Q99986 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VRK1Q99986 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.72■□□□□ 0.43
VRK1Q99986 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC17.72■□□□□ 0.43
VRK1Q99986 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.72■□□□□ 0.43
VRK1Q99986 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
VRK1Q99986 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.71■□□□□ 0.43
VRK1Q99986 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.71■□□□□ 0.43
VRK1Q99986 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VRK1Q99986 STX5-203ENST00000394690 1568 ntTSL 5 BASIC17.71■□□□□ 0.43
VRK1Q99986 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VRK1Q99986 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VRK1Q99986 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.71■□□□□ 0.43
VRK1Q99986 CDV3P1-201ENST00000471403 739 ntBASIC17.71■□□□□ 0.43
VRK1Q99986 ISCU-212ENST00000547005 795 ntTSL 3 BASIC17.71■□□□□ 0.43
VRK1Q99986 AL162412.1-201ENST00000567129 965 ntBASIC17.71■□□□□ 0.43
VRK1Q99986 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.71■□□□□ 0.43
VRK1Q99986 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
VRK1Q99986 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VRK1Q99986 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VRK1Q99986 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.71■□□□□ 0.43
VRK1Q99986 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.42
VRK1Q99986 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.42
VRK1Q99986 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
VRK1Q99986 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
VRK1Q99986 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK1Q99986 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK1Q99986 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
VRK1Q99986 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC17.7■□□□□ 0.42
VRK1Q99986 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VRK1Q99986 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK1Q99986 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.7■□□□□ 0.42
VRK1Q99986 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK1Q99986 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC17.7■□□□□ 0.42
VRK1Q99986 RARRES2P4-201ENST00000514074 484 ntBASIC17.7■□□□□ 0.42
VRK1Q99986 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.7■□□□□ 0.42
VRK1Q99986 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC17.7■□□□□ 0.42
VRK1Q99986 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC17.7■□□□□ 0.42
VRK1Q99986 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VRK1Q99986 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.7■□□□□ 0.42
VRK1Q99986 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.7■□□□□ 0.42
VRK1Q99986 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VRK1Q99986 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK1Q99986 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
VRK1Q99986 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK1Q99986 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VRK1Q99986 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VRK1Q99986 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK1Q99986 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK1Q99986 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK1Q99986 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK1Q99986 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VRK1Q99986 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.69■□□□□ 0.42
VRK1Q99986 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.42
VRK1Q99986 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK1Q99986 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
VRK1Q99986 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
VRK1Q99986 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.69■□□□□ 0.42
VRK1Q99986 AC073210.2-201ENST00000430369 194 ntBASIC17.69■□□□□ 0.42
VRK1Q99986 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.69■□□□□ 0.42
VRK1Q99986 MARS-234ENST00000630571 216 ntTSL 5 BASIC17.69■□□□□ 0.42
VRK1Q99986 MARS-235ENST00000630803 183 ntTSL 3 BASIC17.69■□□□□ 0.42
VRK1Q99986 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC17.69■□□□□ 0.42
VRK1Q99986 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK1Q99986 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VRK1Q99986 AC010980.2-201ENST00000587099 1412 ntBASIC17.69■□□□□ 0.42
VRK1Q99986 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK1Q99986 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
VRK1Q99986 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK1Q99986 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK1Q99986 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VRK1Q99986 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VRK1Q99986 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.69■□□□□ 0.42
VRK1Q99986 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
VRK1Q99986 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VRK1Q99986 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK1Q99986 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
VRK1Q99986 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VRK1Q99986 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VRK1Q99986 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
VRK1Q99986 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
VRK1Q99986 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VRK1Q99986 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC17.68■□□□□ 0.42
VRK1Q99986 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC17.68■□□□□ 0.42
VRK1Q99986 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
VRK1Q99986 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
VRK1Q99986 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC17.68■□□□□ 0.42
VRK1Q99986 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
VRK1Q99986 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.68■□□□□ 0.42
VRK1Q99986 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
VRK1Q99986 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
VRK1Q99986 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
VRK1Q99986 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
VRK1Q99986 TSPY20P-201ENST00000450910 630 ntBASIC17.68■□□□□ 0.42
VRK1Q99986 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms