Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTCHD3Q3KNS1 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
PTCHD3Q3KNS1 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.71■□□□□ 0.75
PTCHD3Q3KNS1 AC073210.2-201ENST00000430369 194 ntBASIC19.71■□□□□ 0.75
PTCHD3Q3KNS1 TSPY20P-201ENST00000450910 630 ntBASIC19.71■□□□□ 0.75
PTCHD3Q3KNS1 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PTCHD3Q3KNS1 AC100791.3-201ENST00000617619 330 ntBASIC19.71■□□□□ 0.75
PTCHD3Q3KNS1 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
PTCHD3Q3KNS1 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PTCHD3Q3KNS1 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTCHD3Q3KNS1 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTCHD3Q3KNS1 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
PTCHD3Q3KNS1 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
PTCHD3Q3KNS1 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTCHD3Q3KNS1 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 AC010980.2-201ENST00000587099 1412 ntBASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 AL391422.3-201ENST00000603791 2761 ntBASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PTCHD3Q3KNS1 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 SMG8-203ENST00000578922 2178 ntBASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 MCRIP2P1-201ENST00000394346 511 ntBASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 MIR4651-201ENST00000582622 73 ntBASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTCHD3Q3KNS1 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 AC092118.2-201ENST00000613495 667 ntBASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PTCHD3Q3KNS1 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms