Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TCRBV7S3A2A0A539 AL356652.1-201ENST00000615962 565 ntBASIC20.53■□□□□ 0.88
TCRBV7S3A2A0A539 CYP21A1P-202ENST00000354927 1481 ntBASIC20.53■□□□□ 0.88
TCRBV7S3A2A0A539 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.53■□□□□ 0.88
TCRBV7S3A2A0A539 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.53■□□□□ 0.88
TCRBV7S3A2A0A539 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TCRBV7S3A2A0A539 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
TCRBV7S3A2A0A539 AC087633.2-202ENST00000565166 1439 ntBASIC20.53■□□□□ 0.88
TCRBV7S3A2A0A539 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TCRBV7S3A2A0A539 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
TCRBV7S3A2A0A539 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.52■□□□□ 0.88
TCRBV7S3A2A0A539 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TCRBV7S3A2A0A539 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TCRBV7S3A2A0A539 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.52■□□□□ 0.88
TCRBV7S3A2A0A539 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TCRBV7S3A2A0A539 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.52■□□□□ 0.88
TCRBV7S3A2A0A539 AL591742.1-201ENST00000604433 565 ntBASIC20.52■□□□□ 0.88
TCRBV7S3A2A0A539 MIR6821-201ENST00000617625 74 ntBASIC20.52■□□□□ 0.88
TCRBV7S3A2A0A539 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
TCRBV7S3A2A0A539 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.52■□□□□ 0.88
TCRBV7S3A2A0A539 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TCRBV7S3A2A0A539 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
TCRBV7S3A2A0A539 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
TCRBV7S3A2A0A539 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
TCRBV7S3A2A0A539 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
TCRBV7S3A2A0A539 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
TCRBV7S3A2A0A539 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TCRBV7S3A2A0A539 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.51■□□□□ 0.87
TCRBV7S3A2A0A539 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.51■□□□□ 0.87
TCRBV7S3A2A0A539 AC116562.4-201ENST00000641316 2276 ntBASIC20.51■□□□□ 0.87
TCRBV7S3A2A0A539 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
TCRBV7S3A2A0A539 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TCRBV7S3A2A0A539 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.51■□□□□ 0.87
TCRBV7S3A2A0A539 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.51■□□□□ 0.87
TCRBV7S3A2A0A539 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.51■□□□□ 0.87
TCRBV7S3A2A0A539 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.51■□□□□ 0.87
TCRBV7S3A2A0A539 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.51■□□□□ 0.87
TCRBV7S3A2A0A539 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TCRBV7S3A2A0A539 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TCRBV7S3A2A0A539 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.51■□□□□ 0.87
TCRBV7S3A2A0A539 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.51■□□□□ 0.87
TCRBV7S3A2A0A539 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TCRBV7S3A2A0A539 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TCRBV7S3A2A0A539 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
TCRBV7S3A2A0A539 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
TCRBV7S3A2A0A539 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TCRBV7S3A2A0A539 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
TCRBV7S3A2A0A539 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.5■□□□□ 0.87
TCRBV7S3A2A0A539 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.5■□□□□ 0.87
TCRBV7S3A2A0A539 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.5■□□□□ 0.87
TCRBV7S3A2A0A539 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TCRBV7S3A2A0A539 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TCRBV7S3A2A0A539 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TCRBV7S3A2A0A539 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
TCRBV7S3A2A0A539 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TCRBV7S3A2A0A539 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
TCRBV7S3A2A0A539 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.5■□□□□ 0.87
TCRBV7S3A2A0A539 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TCRBV7S3A2A0A539 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TCRBV7S3A2A0A539 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TCRBV7S3A2A0A539 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TCRBV7S3A2A0A539 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TCRBV7S3A2A0A539 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TCRBV7S3A2A0A539 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
TCRBV7S3A2A0A539 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
TCRBV7S3A2A0A539 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
TCRBV7S3A2A0A539 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.49■□□□□ 0.87
TCRBV7S3A2A0A539 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.49■□□□□ 0.87
TCRBV7S3A2A0A539 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.49■□□□□ 0.87
TCRBV7S3A2A0A539 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TCRBV7S3A2A0A539 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.49■□□□□ 0.87
TCRBV7S3A2A0A539 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.49■□□□□ 0.87
TCRBV7S3A2A0A539 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TCRBV7S3A2A0A539 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 KRT18P5-201ENST00000436075 1291 ntBASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 MFSD11-216ENST00000590393 1141 ntBASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TCRBV7S3A2A0A539 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TCRBV7S3A2A0A539 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
TCRBV7S3A2A0A539 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms