Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.26■□□□□ 0.99
SMARCAL1Q9NZC9 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SMARCAL1Q9NZC9 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SMARCAL1Q9NZC9 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMARCAL1Q9NZC9 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMARCAL1Q9NZC9 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC21.25■□□□□ 0.99
SMARCAL1Q9NZC9 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMARCAL1Q9NZC9 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMARCAL1Q9NZC9 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC21.25■□□□□ 0.99
SMARCAL1Q9NZC9 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.25■□□□□ 0.99
SMARCAL1Q9NZC9 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMARCAL1Q9NZC9 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
SMARCAL1Q9NZC9 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMARCAL1Q9NZC9 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMARCAL1Q9NZC9 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMARCAL1Q9NZC9 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.25■□□□□ 0.99
SMARCAL1Q9NZC9 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.25■□□□□ 0.99
SMARCAL1Q9NZC9 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.25■□□□□ 0.99
SMARCAL1Q9NZC9 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
SMARCAL1Q9NZC9 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
SMARCAL1Q9NZC9 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SMARCAL1Q9NZC9 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC21.25■□□□□ 0.99
SMARCAL1Q9NZC9 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SMARCAL1Q9NZC9 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SMARCAL1Q9NZC9 DPP3P2-201ENST00000416030 1696 ntBASIC21.24■□□□□ 0.99
SMARCAL1Q9NZC9 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SMARCAL1Q9NZC9 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC21.24■□□□□ 0.99
SMARCAL1Q9NZC9 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.24■□□□□ 0.99
SMARCAL1Q9NZC9 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
SMARCAL1Q9NZC9 AC004408.2-201ENST00000623613 2777 ntBASIC21.24■□□□□ 0.99
SMARCAL1Q9NZC9 AC245052.3-201ENST00000450182 901 ntBASIC21.24■□□□□ 0.99
SMARCAL1Q9NZC9 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.24■□□□□ 0.99
SMARCAL1Q9NZC9 AL354811.1-201ENST00000610286 706 ntBASIC21.24■□□□□ 0.99
SMARCAL1Q9NZC9 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.24■□□□□ 0.99
SMARCAL1Q9NZC9 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMARCAL1Q9NZC9 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
SMARCAL1Q9NZC9 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SMARCAL1Q9NZC9 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
SMARCAL1Q9NZC9 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.24■□□□□ 0.99
SMARCAL1Q9NZC9 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.24■□□□□ 0.99
SMARCAL1Q9NZC9 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SMARCAL1Q9NZC9 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC21.24■□□□□ 0.99
SMARCAL1Q9NZC9 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC21.24■□□□□ 0.99
SMARCAL1Q9NZC9 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCAL1Q9NZC9 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCAL1Q9NZC9 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
SMARCAL1Q9NZC9 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
SMARCAL1Q9NZC9 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCAL1Q9NZC9 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCAL1Q9NZC9 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC21.23■□□□□ 0.99
SMARCAL1Q9NZC9 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.23■□□□□ 0.99
SMARCAL1Q9NZC9 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCAL1Q9NZC9 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCAL1Q9NZC9 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.23■□□□□ 0.99
SMARCAL1Q9NZC9 AL358852.1-201ENST00000623174 1268 ntBASIC21.23■□□□□ 0.99
SMARCAL1Q9NZC9 KRT87P-202ENST00000534226 1464 ntBASIC21.23■□□□□ 0.99
SMARCAL1Q9NZC9 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCAL1Q9NZC9 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.23■□□□□ 0.99
SMARCAL1Q9NZC9 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCAL1Q9NZC9 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCAL1Q9NZC9 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMARCAL1Q9NZC9 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.23■□□□□ 0.99
SMARCAL1Q9NZC9 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 ZNRF2P3-201ENST00000424200 374 ntBASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 AC079140.4-201ENST00000507448 529 ntBASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 SLC7A5P2-201ENST00000553010 536 ntBASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMARCAL1Q9NZC9 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC21.21■□□□□ 0.99
SMARCAL1Q9NZC9 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCAL1Q9NZC9 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCAL1Q9NZC9 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.21■□□□□ 0.99
SMARCAL1Q9NZC9 AC116050.2-201ENST00000612102 1779 ntBASIC21.21■□□□□ 0.99
SMARCAL1Q9NZC9 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
SMARCAL1Q9NZC9 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCAL1Q9NZC9 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCAL1Q9NZC9 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCAL1Q9NZC9 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCAL1Q9NZC9 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC21.21■□□□□ 0.99
SMARCAL1Q9NZC9 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCAL1Q9NZC9 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCAL1Q9NZC9 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCAL1Q9NZC9 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SMARCAL1Q9NZC9 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
SMARCAL1Q9NZC9 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms