Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 AC135279.3-201ENST00000610945 1311 ntBASIC18.41■□□□□ 0.54
CLN6Q9NWW5 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CLN6Q9NWW5 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.41■□□□□ 0.54
CLN6Q9NWW5 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLN6Q9NWW5 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLN6Q9NWW5 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLN6Q9NWW5 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLN6Q9NWW5 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLN6Q9NWW5 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLN6Q9NWW5 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLN6Q9NWW5 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLN6Q9NWW5 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 EEF1DP3-203ENST00000566025 782 ntBASIC18.4■□□□□ 0.54
CLN6Q9NWW5 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLN6Q9NWW5 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.39■□□□□ 0.54
CLN6Q9NWW5 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
CLN6Q9NWW5 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 AC008764.7-201ENST00000593779 1081 ntBASIC18.39■□□□□ 0.53
CLN6Q9NWW5 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.39■□□□□ 0.53
CLN6Q9NWW5 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 MIR2861-201ENST00000636310 90 ntBASIC18.38■□□□□ 0.53
CLN6Q9NWW5 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 TNXA-203ENST00000507684 2038 ntBASIC18.38■□□□□ 0.53
CLN6Q9NWW5 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLN6Q9NWW5 TMEM179-206ENST00000616017 1645 ntBASIC18.38■□□□□ 0.53
CLN6Q9NWW5 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLN6Q9NWW5 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLN6Q9NWW5 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLN6Q9NWW5 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLN6Q9NWW5 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLN6Q9NWW5 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.37■□□□□ 0.53
CLN6Q9NWW5 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms