Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
NKX3-1Q99801 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
NKX3-1Q99801 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
NKX3-1Q99801 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
NKX3-1Q99801 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NKX3-1Q99801 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
NKX3-1Q99801 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
NKX3-1Q99801 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.57■□□□□ 0.4
NKX3-1Q99801 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NKX3-1Q99801 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NKX3-1Q99801 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NKX3-1Q99801 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NKX3-1Q99801 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
NKX3-1Q99801 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NKX3-1Q99801 JTB-203ENST00000368589 1216 ntTSL 2 BASIC17.57■□□□□ 0.4
NKX3-1Q99801 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NKX3-1Q99801 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC17.57■□□□□ 0.4
NKX3-1Q99801 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NKX3-1Q99801 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC17.57■□□□□ 0.4
NKX3-1Q99801 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.57■□□□□ 0.4
NKX3-1Q99801 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.57■□□□□ 0.4
NKX3-1Q99801 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NKX3-1Q99801 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NKX3-1Q99801 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.56■□□□□ 0.4
NKX3-1Q99801 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NKX3-1Q99801 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
NKX3-1Q99801 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.56■□□□□ 0.4
NKX3-1Q99801 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
NKX3-1Q99801 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
NKX3-1Q99801 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC17.56■□□□□ 0.4
NKX3-1Q99801 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NKX3-1Q99801 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NKX3-1Q99801 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NKX3-1Q99801 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
NKX3-1Q99801 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC17.56■□□□□ 0.4
NKX3-1Q99801 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
NKX3-1Q99801 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NKX3-1Q99801 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NKX3-1Q99801 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC17.56■□□□□ 0.4
NKX3-1Q99801 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
NKX3-1Q99801 SP2-202ENST00000613139 908 ntTSL 5 BASIC17.56■□□□□ 0.4
NKX3-1Q99801 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NKX3-1Q99801 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17.56■□□□□ 0.4
NKX3-1Q99801 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NKX3-1Q99801 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
NKX3-1Q99801 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
NKX3-1Q99801 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NKX3-1Q99801 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NKX3-1Q99801 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
NKX3-1Q99801 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
NKX3-1Q99801 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
NKX3-1Q99801 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC17.55■□□□□ 0.4
NKX3-1Q99801 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
NKX3-1Q99801 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC17.55■□□□□ 0.4
NKX3-1Q99801 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NKX3-1Q99801 POU5F1P4-201ENST00000413175 1085 ntBASIC17.55■□□□□ 0.4
NKX3-1Q99801 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NKX3-1Q99801 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC17.55■□□□□ 0.4
NKX3-1Q99801 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC17.55■□□□□ 0.4
NKX3-1Q99801 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NKX3-1Q99801 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NKX3-1Q99801 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NKX3-1Q99801 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NKX3-1Q99801 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
NKX3-1Q99801 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NKX3-1Q99801 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
NKX3-1Q99801 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NKX3-1Q99801 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
NKX3-1Q99801 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NKX3-1Q99801 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NKX3-1Q99801 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NKX3-1Q99801 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NKX3-1Q99801 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NKX3-1Q99801 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NKX3-1Q99801 AK1-201ENST00000223836 736 ntTSL 3 BASIC17.54■□□□□ 0.4
NKX3-1Q99801 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.54■□□□□ 0.4
NKX3-1Q99801 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
NKX3-1Q99801 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NKX3-1Q99801 AC245052.3-201ENST00000450182 901 ntBASIC17.54■□□□□ 0.4
NKX3-1Q99801 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NKX3-1Q99801 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.54■□□□□ 0.4
NKX3-1Q99801 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NKX3-1Q99801 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
NKX3-1Q99801 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
NKX3-1Q99801 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.54■□□□□ 0.4
NKX3-1Q99801 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
NKX3-1Q99801 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
NKX3-1Q99801 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
NKX3-1Q99801 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NKX3-1Q99801 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
NKX3-1Q99801 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
NKX3-1Q99801 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.53■□□□□ 0.4
NKX3-1Q99801 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.53■□□□□ 0.4
NKX3-1Q99801 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX3-1Q99801 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
NKX3-1Q99801 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX3-1Q99801 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX3-1Q99801 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
NKX3-1Q99801 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NKX3-1Q99801 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms