Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC20.81■□□□□ 0.92
SLC44A3Q8N4M1 REXO1L10P-201ENST00000615707 1290 ntBASIC20.81■□□□□ 0.92
SLC44A3Q8N4M1 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.81■□□□□ 0.92
SLC44A3Q8N4M1 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SLC44A3Q8N4M1 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SLC44A3Q8N4M1 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 AP000525.1-201ENST00000608286 694 ntBASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
SLC44A3Q8N4M1 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SLC44A3Q8N4M1 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
SLC44A3Q8N4M1 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SLC44A3Q8N4M1 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SLC44A3Q8N4M1 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SLC44A3Q8N4M1 MIR1238-201ENST00000408483 83 ntBASIC20.79■□□□□ 0.92
SLC44A3Q8N4M1 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.79■□□□□ 0.92
SLC44A3Q8N4M1 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.79■□□□□ 0.92
SLC44A3Q8N4M1 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.79■□□□□ 0.92
SLC44A3Q8N4M1 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.79■□□□□ 0.92
SLC44A3Q8N4M1 LINC01568-207ENST00000641790 1380 ntBASIC20.79■□□□□ 0.92
SLC44A3Q8N4M1 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
SLC44A3Q8N4M1 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.79■□□□□ 0.92
SLC44A3Q8N4M1 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SLC44A3Q8N4M1 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
SLC44A3Q8N4M1 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
SLC44A3Q8N4M1 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SLC44A3Q8N4M1 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SLC44A3Q8N4M1 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SLC44A3Q8N4M1 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SLC44A3Q8N4M1 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.78■□□□□ 0.92
SLC44A3Q8N4M1 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SLC44A3Q8N4M1 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SLC44A3Q8N4M1 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.78■□□□□ 0.92
SLC44A3Q8N4M1 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SLC44A3Q8N4M1 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.78■□□□□ 0.92
SLC44A3Q8N4M1 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.78■□□□□ 0.92
SLC44A3Q8N4M1 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.78■□□□□ 0.92
SLC44A3Q8N4M1 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SLC44A3Q8N4M1 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.78■□□□□ 0.92
SLC44A3Q8N4M1 C9orf163-202ENST00000624034 2573 ntBASIC20.78■□□□□ 0.92
SLC44A3Q8N4M1 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SLC44A3Q8N4M1 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SLC44A3Q8N4M1 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SLC44A3Q8N4M1 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
SLC44A3Q8N4M1 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.77■□□□□ 0.92
SLC44A3Q8N4M1 AP002982.1-201ENST00000492365 877 ntBASIC20.77■□□□□ 0.92
SLC44A3Q8N4M1 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.77■□□□□ 0.92
SLC44A3Q8N4M1 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.77■□□□□ 0.92
SLC44A3Q8N4M1 NME3-204ENST00000563498 920 ntTSL 2 BASIC20.77■□□□□ 0.92
SLC44A3Q8N4M1 AL031963.3-201ENST00000606441 850 ntBASIC20.77■□□□□ 0.92
SLC44A3Q8N4M1 AC004264.1-201ENST00000608354 794 ntBASIC20.77■□□□□ 0.92
SLC44A3Q8N4M1 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SLC44A3Q8N4M1 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
SLC44A3Q8N4M1 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SLC44A3Q8N4M1 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SLC44A3Q8N4M1 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
SLC44A3Q8N4M1 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SLC44A3Q8N4M1 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SLC44A3Q8N4M1 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 AC113347.1-201ENST00000413321 391 ntBASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SLC44A3Q8N4M1 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SLC44A3Q8N4M1 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SLC44A3Q8N4M1 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.75■□□□□ 0.91
SLC44A3Q8N4M1 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SLC44A3Q8N4M1 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms