Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC25.93■■□□□ 1.74
USP42Q9H9J4 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC25.92■■□□□ 1.74
USP42Q9H9J4 RER1-204ENST00000378518 522 ntTSL 3 BASIC25.92■■□□□ 1.74
USP42Q9H9J4 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC25.92■■□□□ 1.74
USP42Q9H9J4 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
USP42Q9H9J4 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC25.92■■□□□ 1.74
USP42Q9H9J4 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC25.92■■□□□ 1.74
USP42Q9H9J4 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
USP42Q9H9J4 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
USP42Q9H9J4 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
USP42Q9H9J4 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC25.92■■□□□ 1.74
USP42Q9H9J4 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC25.92■■□□□ 1.74
USP42Q9H9J4 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC25.92■■□□□ 1.74
USP42Q9H9J4 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
USP42Q9H9J4 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC25.92■■□□□ 1.74
USP42Q9H9J4 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
USP42Q9H9J4 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC25.91■■□□□ 1.74
USP42Q9H9J4 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC25.91■■□□□ 1.74
USP42Q9H9J4 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC25.91■■□□□ 1.74
USP42Q9H9J4 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC25.91■■□□□ 1.74
USP42Q9H9J4 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC25.91■■□□□ 1.74
USP42Q9H9J4 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC25.91■■□□□ 1.74
USP42Q9H9J4 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC25.91■■□□□ 1.74
USP42Q9H9J4 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
USP42Q9H9J4 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
USP42Q9H9J4 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.74
USP42Q9H9J4 PGM5P4-201ENST00000421970 445 ntBASIC25.9■■□□□ 1.74
USP42Q9H9J4 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
USP42Q9H9J4 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC25.9■■□□□ 1.74
USP42Q9H9J4 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC25.9■■□□□ 1.74
USP42Q9H9J4 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC25.9■■□□□ 1.74
USP42Q9H9J4 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
USP42Q9H9J4 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
USP42Q9H9J4 Z98882.1-201ENST00000622160 2253 ntBASIC25.9■■□□□ 1.74
USP42Q9H9J4 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
USP42Q9H9J4 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC25.9■■□□□ 1.74
USP42Q9H9J4 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC25.9■■□□□ 1.74
USP42Q9H9J4 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
USP42Q9H9J4 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
USP42Q9H9J4 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
USP42Q9H9J4 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
USP42Q9H9J4 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC25.89■■□□□ 1.74
USP42Q9H9J4 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
USP42Q9H9J4 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
USP42Q9H9J4 AL353708.3-201ENST00000610272 989 ntBASIC25.89■■□□□ 1.74
USP42Q9H9J4 AL356652.1-201ENST00000615962 565 ntBASIC25.89■■□□□ 1.74
USP42Q9H9J4 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.74
USP42Q9H9J4 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC25.89■■□□□ 1.74
USP42Q9H9J4 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC25.89■■□□□ 1.73
USP42Q9H9J4 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
USP42Q9H9J4 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC25.89■■□□□ 1.73
USP42Q9H9J4 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC25.89■■□□□ 1.73
USP42Q9H9J4 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC25.89■■□□□ 1.73
USP42Q9H9J4 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.73
USP42Q9H9J4 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC25.89■■□□□ 1.73
USP42Q9H9J4 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC25.89■■□□□ 1.73
USP42Q9H9J4 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC25.88■■□□□ 1.73
USP42Q9H9J4 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
USP42Q9H9J4 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
USP42Q9H9J4 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
USP42Q9H9J4 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
USP42Q9H9J4 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
USP42Q9H9J4 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.88■■□□□ 1.73
USP42Q9H9J4 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
USP42Q9H9J4 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
USP42Q9H9J4 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC25.88■■□□□ 1.73
USP42Q9H9J4 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC25.88■■□□□ 1.73
USP42Q9H9J4 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC25.88■■□□□ 1.73
USP42Q9H9J4 AL390719.1-204ENST00000412397 1219 ntBASIC25.88■■□□□ 1.73
USP42Q9H9J4 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC25.88■■□□□ 1.73
USP42Q9H9J4 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC25.88■■□□□ 1.73
USP42Q9H9J4 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC25.88■■□□□ 1.73
USP42Q9H9J4 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
USP42Q9H9J4 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
USP42Q9H9J4 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
USP42Q9H9J4 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
USP42Q9H9J4 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC25.87■■□□□ 1.73
USP42Q9H9J4 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
USP42Q9H9J4 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
USP42Q9H9J4 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
USP42Q9H9J4 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC25.87■■□□□ 1.73
USP42Q9H9J4 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
USP42Q9H9J4 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
USP42Q9H9J4 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
USP42Q9H9J4 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC25.87■■□□□ 1.73
USP42Q9H9J4 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
USP42Q9H9J4 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
USP42Q9H9J4 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC25.87■■□□□ 1.73
USP42Q9H9J4 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC25.87■■□□□ 1.73
USP42Q9H9J4 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC25.87■■□□□ 1.73
USP42Q9H9J4 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC25.87■■□□□ 1.73
USP42Q9H9J4 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC25.87■■□□□ 1.73
USP42Q9H9J4 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC25.87■■□□□ 1.73
USP42Q9H9J4 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
USP42Q9H9J4 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC25.86■■□□□ 1.73
USP42Q9H9J4 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC25.86■■□□□ 1.73
USP42Q9H9J4 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
USP42Q9H9J4 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
USP42Q9H9J4 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
USP42Q9H9J4 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms