Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
BEST3Q8N1M1 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
BEST3Q8N1M1 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
BEST3Q8N1M1 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 UNC93B4-201ENST00000505679 747 ntBASIC18.79■□□□□ 0.6
BEST3Q8N1M1 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 AC011484.1-201ENST00000377652 1995 ntBASIC18.79■□□□□ 0.6
BEST3Q8N1M1 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
BEST3Q8N1M1 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.78■□□□□ 0.6
BEST3Q8N1M1 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 SOX15-203ENST00000570788 1093 ntBASIC18.78■□□□□ 0.6
BEST3Q8N1M1 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
BEST3Q8N1M1 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 GCSHP5-201ENST00000443090 522 ntBASIC18.77■□□□□ 0.6
BEST3Q8N1M1 AL158047.1-201ENST00000445918 881 ntBASIC18.77■□□□□ 0.6
BEST3Q8N1M1 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.77■□□□□ 0.6
BEST3Q8N1M1 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 AC093827.2-201ENST00000512654 315 ntBASIC18.77■□□□□ 0.6
BEST3Q8N1M1 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BEST3Q8N1M1 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
BEST3Q8N1M1 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
BEST3Q8N1M1 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
BEST3Q8N1M1 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
BEST3Q8N1M1 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
BEST3Q8N1M1 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BEST3Q8N1M1 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
BEST3Q8N1M1 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BEST3Q8N1M1 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
BEST3Q8N1M1 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
BEST3Q8N1M1 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BEST3Q8N1M1 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.76■□□□□ 0.59
BEST3Q8N1M1 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BEST3Q8N1M1 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.76■□□□□ 0.59
BEST3Q8N1M1 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.76■□□□□ 0.59
BEST3Q8N1M1 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BEST3Q8N1M1 AC142381.4-202ENST00000563973 229 ntBASIC18.76■□□□□ 0.59
BEST3Q8N1M1 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.76■□□□□ 0.59
BEST3Q8N1M1 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms