Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.91■■□□□ 1.1
KRT39Q6A163 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.91■■□□□ 1.1
KRT39Q6A163 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.91■■□□□ 1.1
KRT39Q6A163 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
KRT39Q6A163 AL589743.5-201ENST00000616611 1050 ntBASIC21.91■■□□□ 1.1
KRT39Q6A163 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
KRT39Q6A163 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
KRT39Q6A163 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.91■■□□□ 1.1
KRT39Q6A163 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
KRT39Q6A163 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
KRT39Q6A163 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
KRT39Q6A163 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
KRT39Q6A163 MKRN4P-201ENST00000444706 1521 ntBASIC21.9■■□□□ 1.1
KRT39Q6A163 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.9■■□□□ 1.1
KRT39Q6A163 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
KRT39Q6A163 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
KRT39Q6A163 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
KRT39Q6A163 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
KRT39Q6A163 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
KRT39Q6A163 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
KRT39Q6A163 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.9■■□□□ 1.1
KRT39Q6A163 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.9■■□□□ 1.1
KRT39Q6A163 AL121832.2-201ENST00000610979 668 ntBASIC21.9■■□□□ 1.1
KRT39Q6A163 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.9■■□□□ 1.1
KRT39Q6A163 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.9■■□□□ 1.1
KRT39Q6A163 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21.9■■□□□ 1.1
KRT39Q6A163 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
KRT39Q6A163 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.9■■□□□ 1.1
KRT39Q6A163 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
KRT39Q6A163 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
KRT39Q6A163 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
KRT39Q6A163 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
KRT39Q6A163 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.9■■□□□ 1.1
KRT39Q6A163 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
KRT39Q6A163 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
KRT39Q6A163 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
KRT39Q6A163 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.1
KRT39Q6A163 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.1
KRT39Q6A163 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.89■■□□□ 1.1
KRT39Q6A163 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
KRT39Q6A163 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.89■■□□□ 1.09
KRT39Q6A163 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
KRT39Q6A163 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.89■■□□□ 1.09
KRT39Q6A163 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.89■■□□□ 1.09
KRT39Q6A163 AC083906.2-201ENST00000511578 360 ntBASIC21.89■■□□□ 1.09
KRT39Q6A163 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.89■■□□□ 1.09
KRT39Q6A163 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
KRT39Q6A163 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.89■■□□□ 1.09
KRT39Q6A163 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.89■■□□□ 1.09
KRT39Q6A163 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
KRT39Q6A163 KRT17P1-201ENST00000399211 1546 ntBASIC21.89■■□□□ 1.09
KRT39Q6A163 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC21.89■■□□□ 1.09
KRT39Q6A163 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
KRT39Q6A163 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
KRT39Q6A163 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC21.89■■□□□ 1.09
KRT39Q6A163 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.89■■□□□ 1.09
KRT39Q6A163 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
KRT39Q6A163 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC21.88■■□□□ 1.09
KRT39Q6A163 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.88■■□□□ 1.09
KRT39Q6A163 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
KRT39Q6A163 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
KRT39Q6A163 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
KRT39Q6A163 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
KRT39Q6A163 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC21.88■■□□□ 1.09
KRT39Q6A163 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
KRT39Q6A163 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
KRT39Q6A163 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.88■■□□□ 1.09
KRT39Q6A163 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.88■■□□□ 1.09
KRT39Q6A163 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.88■■□□□ 1.09
KRT39Q6A163 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
KRT39Q6A163 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
KRT39Q6A163 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC21.88■■□□□ 1.09
KRT39Q6A163 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
KRT39Q6A163 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.88■■□□□ 1.09
KRT39Q6A163 DPP3P2-201ENST00000416030 1696 ntBASIC21.88■■□□□ 1.09
KRT39Q6A163 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
KRT39Q6A163 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.88■■□□□ 1.09
KRT39Q6A163 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
KRT39Q6A163 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.87■■□□□ 1.09
KRT39Q6A163 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
KRT39Q6A163 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
KRT39Q6A163 SMG8-203ENST00000578922 2178 ntBASIC21.87■■□□□ 1.09
KRT39Q6A163 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
KRT39Q6A163 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.87■■□□□ 1.09
KRT39Q6A163 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
KRT39Q6A163 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
KRT39Q6A163 NCF1B-203ENST00000435988 1254 ntBASIC21.87■■□□□ 1.09
KRT39Q6A163 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
KRT39Q6A163 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
KRT39Q6A163 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.87■■□□□ 1.09
KRT39Q6A163 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
KRT39Q6A163 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
KRT39Q6A163 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
KRT39Q6A163 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.86■■□□□ 1.09
KRT39Q6A163 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
KRT39Q6A163 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
KRT39Q6A163 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
KRT39Q6A163 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC21.86■■□□□ 1.09
KRT39Q6A163 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.86■■□□□ 1.09
KRT39Q6A163 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms