Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.77■□□□□ 0.6
RNF4P78317 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.77■□□□□ 0.6
RNF4P78317 HLA-B-256ENST00000639848 1089 ntBASIC18.77■□□□□ 0.6
RNF4P78317 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.77■□□□□ 0.6
RNF4P78317 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.77■□□□□ 0.59
RNF4P78317 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
RNF4P78317 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF4P78317 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF4P78317 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF4P78317 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF4P78317 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF4P78317 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF4P78317 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.76■□□□□ 0.59
RNF4P78317 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.76■□□□□ 0.59
RNF4P78317 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.76■□□□□ 0.59
RNF4P78317 AC060766.5-201ENST00000590539 871 ntBASIC18.76■□□□□ 0.59
RNF4P78317 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
RNF4P78317 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RNF4P78317 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.76■□□□□ 0.59
RNF4P78317 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
RNF4P78317 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF4P78317 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.76■□□□□ 0.59
RNF4P78317 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF4P78317 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
RNF4P78317 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF4P78317 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF4P78317 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF4P78317 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.75■□□□□ 0.59
RNF4P78317 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF4P78317 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF4P78317 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.75■□□□□ 0.59
RNF4P78317 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.75■□□□□ 0.59
RNF4P78317 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF4P78317 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RNF4P78317 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
RNF4P78317 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF4P78317 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF4P78317 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF4P78317 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF4P78317 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF4P78317 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF4P78317 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.74■□□□□ 0.59
RNF4P78317 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RNF4P78317 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RNF4P78317 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RNF4P78317 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
RNF4P78317 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RNF4P78317 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
RNF4P78317 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
RNF4P78317 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RNF4P78317 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.74■□□□□ 0.59
RNF4P78317 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RNF4P78317 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
RNF4P78317 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.74■□□□□ 0.59
RNF4P78317 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.74■□□□□ 0.59
RNF4P78317 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
RNF4P78317 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RNF4P78317 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RNF4P78317 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RNF4P78317 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RNF4P78317 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RNF4P78317 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RNF4P78317 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RNF4P78317 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RNF4P78317 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.73■□□□□ 0.59
RNF4P78317 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.73■□□□□ 0.59
RNF4P78317 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
RNF4P78317 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RNF4P78317 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.73■□□□□ 0.59
RNF4P78317 AC092368.3-202ENST00000574180 1591 ntBASIC18.73■□□□□ 0.59
RNF4P78317 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RNF4P78317 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
RNF4P78317 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RNF4P78317 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RNF4P78317 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RNF4P78317 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RNF4P78317 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.73■□□□□ 0.59
RNF4P78317 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.73■□□□□ 0.59
RNF4P78317 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
RNF4P78317 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RNF4P78317 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RNF4P78317 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RNF4P78317 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.73■□□□□ 0.59
RNF4P78317 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
RNF4P78317 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.73■□□□□ 0.59
RNF4P78317 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.73■□□□□ 0.59
RNF4P78317 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RNF4P78317 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RNF4P78317 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RNF4P78317 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
RNF4P78317 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.72■□□□□ 0.59
RNF4P78317 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RNF4P78317 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RNF4P78317 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.72■□□□□ 0.59
RNF4P78317 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.72■□□□□ 0.59
RNF4P78317 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.72■□□□□ 0.59
RNF4P78317 PNMA6B-201ENST00000538162 1200 ntBASIC18.72■□□□□ 0.59
RNF4P78317 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.72■□□□□ 0.59
RNF4P78317 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RNF4P78317 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms