Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NEK3P51956 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
NEK3P51956 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.86■□□□□ 0.93
NEK3P51956 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.86■□□□□ 0.93
NEK3P51956 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
NEK3P51956 AC073210.2-201ENST00000430369 194 ntBASIC20.86■□□□□ 0.93
NEK3P51956 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.86■□□□□ 0.93
NEK3P51956 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.86■□□□□ 0.93
NEK3P51956 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.86■□□□□ 0.93
NEK3P51956 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NEK3P51956 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.86■□□□□ 0.93
NEK3P51956 AC027702.1-201ENST00000563810 1770 ntBASIC20.86■□□□□ 0.93
NEK3P51956 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
NEK3P51956 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NEK3P51956 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
NEK3P51956 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
NEK3P51956 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEK3P51956 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NEK3P51956 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.85■□□□□ 0.93
NEK3P51956 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NEK3P51956 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.85■□□□□ 0.93
NEK3P51956 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
NEK3P51956 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.85■□□□□ 0.93
NEK3P51956 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.85■□□□□ 0.93
NEK3P51956 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NEK3P51956 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.85■□□□□ 0.93
NEK3P51956 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
NEK3P51956 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NEK3P51956 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.85■□□□□ 0.93
NEK3P51956 AC010980.2-201ENST00000587099 1412 ntBASIC20.85■□□□□ 0.93
NEK3P51956 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEK3P51956 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEK3P51956 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.85■□□□□ 0.93
NEK3P51956 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
NEK3P51956 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NEK3P51956 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
NEK3P51956 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
NEK3P51956 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
NEK3P51956 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NEK3P51956 BX276092.2-201ENST00000417668 665 ntBASIC20.84■□□□□ 0.93
NEK3P51956 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.84■□□□□ 0.93
NEK3P51956 AC098934.4-201ENST00000564127 592 ntBASIC20.84■□□□□ 0.93
NEK3P51956 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.84■□□□□ 0.93
NEK3P51956 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NEK3P51956 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
NEK3P51956 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NEK3P51956 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
NEK3P51956 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
NEK3P51956 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.84■□□□□ 0.93
NEK3P51956 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
NEK3P51956 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NEK3P51956 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.83■□□□□ 0.93
NEK3P51956 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NEK3P51956 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NEK3P51956 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NEK3P51956 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NEK3P51956 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NEK3P51956 AC092118.2-201ENST00000613495 667 ntBASIC20.83■□□□□ 0.93
NEK3P51956 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NEK3P51956 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NEK3P51956 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.83■□□□□ 0.92
NEK3P51956 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
NEK3P51956 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.83■□□□□ 0.92
NEK3P51956 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NEK3P51956 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
NEK3P51956 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.82■□□□□ 0.92
NEK3P51956 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NEK3P51956 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NEK3P51956 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NEK3P51956 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NEK3P51956 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.82■□□□□ 0.92
NEK3P51956 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.82■□□□□ 0.92
NEK3P51956 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.82■□□□□ 0.92
NEK3P51956 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.82■□□□□ 0.92
NEK3P51956 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.82■□□□□ 0.92
NEK3P51956 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.82■□□□□ 0.92
NEK3P51956 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NEK3P51956 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NEK3P51956 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NEK3P51956 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
NEK3P51956 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
NEK3P51956 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
NEK3P51956 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
NEK3P51956 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NEK3P51956 AC121338.2-201ENST00000622535 1744 ntBASIC20.81■□□□□ 0.92
NEK3P51956 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.81■□□□□ 0.92
NEK3P51956 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.81■□□□□ 0.92
NEK3P51956 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
NEK3P51956 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
NEK3P51956 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
NEK3P51956 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NEK3P51956 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.81■□□□□ 0.92
NEK3P51956 AC007322.3-201ENST00000426526 701 ntBASIC20.81■□□□□ 0.92
NEK3P51956 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.81■□□□□ 0.92
NEK3P51956 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NEK3P51956 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
NEK3P51956 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.81■□□□□ 0.92
NEK3P51956 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NEK3P51956 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
NEK3P51956 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms