Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 SNX3-202ENST00000349379 890 ntTSL 2 BASIC16.55■□□□□ 0.24
NKX2-1P43699 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NKX2-1P43699 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NKX2-1P43699 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NKX2-1P43699 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC16.55■□□□□ 0.24
NKX2-1P43699 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NKX2-1P43699 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NKX2-1P43699 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC16.55■□□□□ 0.24
NKX2-1P43699 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
NKX2-1P43699 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
NKX2-1P43699 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
NKX2-1P43699 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
NKX2-1P43699 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NKX2-1P43699 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NKX2-1P43699 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
NKX2-1P43699 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NKX2-1P43699 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
NKX2-1P43699 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NKX2-1P43699 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
NKX2-1P43699 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
NKX2-1P43699 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC16.55■□□□□ 0.24
NKX2-1P43699 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX2-1P43699 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
NKX2-1P43699 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
NKX2-1P43699 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC16.54■□□□□ 0.24
NKX2-1P43699 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX2-1P43699 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX2-1P43699 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX2-1P43699 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX2-1P43699 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX2-1P43699 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX2-1P43699 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX2-1P43699 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
NKX2-1P43699 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC16.54■□□□□ 0.24
NKX2-1P43699 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NKX2-1P43699 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX2-1P43699 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC16.54■□□□□ 0.24
NKX2-1P43699 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
NKX2-1P43699 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
NKX2-1P43699 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX2-1P43699 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX2-1P43699 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NKX2-1P43699 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX2-1P43699 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX2-1P43699 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC16.54■□□□□ 0.24
NKX2-1P43699 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX2-1P43699 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
NKX2-1P43699 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX2-1P43699 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC16.54■□□□□ 0.24
NKX2-1P43699 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX2-1P43699 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC16.53■□□□□ 0.24
NKX2-1P43699 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC16.53■□□□□ 0.24
NKX2-1P43699 AC020763.4-201ENST00000623414 4170 ntBASIC16.53■□□□□ 0.24
NKX2-1P43699 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC16.53■□□□□ 0.24
NKX2-1P43699 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
NKX2-1P43699 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
NKX2-1P43699 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC16.53■□□□□ 0.24
NKX2-1P43699 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC16.53■□□□□ 0.24
NKX2-1P43699 QDPR-206ENST00000508623 601 ntTSL 3 BASIC16.53■□□□□ 0.24
NKX2-1P43699 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC16.53■□□□□ 0.24
NKX2-1P43699 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
NKX2-1P43699 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
NKX2-1P43699 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC16.53■□□□□ 0.24
NKX2-1P43699 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC16.53■□□□□ 0.24
NKX2-1P43699 AL512631.2-201ENST00000604634 923 ntBASIC16.53■□□□□ 0.24
NKX2-1P43699 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
NKX2-1P43699 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
NKX2-1P43699 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC16.53■□□□□ 0.24
NKX2-1P43699 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX2-1P43699 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX2-1P43699 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.53■□□□□ 0.24
NKX2-1P43699 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX2-1P43699 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX2-1P43699 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX2-1P43699 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC16.53■□□□□ 0.24
NKX2-1P43699 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
NKX2-1P43699 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC16.52■□□□□ 0.24
NKX2-1P43699 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC16.52■□□□□ 0.24
NKX2-1P43699 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NKX2-1P43699 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NKX2-1P43699 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
NKX2-1P43699 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
NKX2-1P43699 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
NKX2-1P43699 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NKX2-1P43699 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
NKX2-1P43699 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
NKX2-1P43699 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
NKX2-1P43699 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NKX2-1P43699 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC16.52■□□□□ 0.24
NKX2-1P43699 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
NKX2-1P43699 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
NKX2-1P43699 SRR-208ENST00000576848 588 ntTSL 4 BASIC16.52■□□□□ 0.24
NKX2-1P43699 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC16.52■□□□□ 0.24
NKX2-1P43699 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC16.52■□□□□ 0.24
NKX2-1P43699 SF1-220ENST00000626028 704 ntTSL 2 BASIC16.52■□□□□ 0.24
NKX2-1P43699 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
NKX2-1P43699 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
NKX2-1P43699 AC005224.4-201ENST00000583262 1652 ntBASIC16.52■□□□□ 0.23
NKX2-1P43699 AC004408.2-201ENST00000623613 2777 ntBASIC16.52■□□□□ 0.23
NKX2-1P43699 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.52■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms