Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 AC137761.2-201ENST00000561729 223 ntBASIC18.87■□□□□ 0.61
HMGN4O00479 AC087633.2-202ENST00000565166 1439 ntBASIC18.87■□□□□ 0.61
HMGN4O00479 AC145350.3-201ENST00000569033 163 ntBASIC18.87■□□□□ 0.61
HMGN4O00479 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
HMGN4O00479 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGN4O00479 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGN4O00479 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGN4O00479 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
HMGN4O00479 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.86■□□□□ 0.61
HMGN4O00479 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HMGN4O00479 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HMGN4O00479 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HMGN4O00479 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
HMGN4O00479 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGN4O00479 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGN4O00479 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
HMGN4O00479 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGN4O00479 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGN4O00479 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HMGN4O00479 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGN4O00479 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.86■□□□□ 0.61
HMGN4O00479 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.86■□□□□ 0.61
HMGN4O00479 AL162412.1-201ENST00000567129 965 ntBASIC18.86■□□□□ 0.61
HMGN4O00479 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.86■□□□□ 0.61
HMGN4O00479 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.86■□□□□ 0.61
HMGN4O00479 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HMGN4O00479 AC013268.1-206ENST00000638368 961 ntBASIC18.86■□□□□ 0.61
HMGN4O00479 AC112229.1-201ENST00000639295 961 ntBASIC18.86■□□□□ 0.61
HMGN4O00479 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.86■□□□□ 0.61
HMGN4O00479 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGN4O00479 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGN4O00479 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
HMGN4O00479 CYP21A1P-202ENST00000354927 1481 ntBASIC18.85■□□□□ 0.61
HMGN4O00479 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGN4O00479 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HMGN4O00479 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HMGN4O00479 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGN4O00479 AC026271.2-201ENST00000428091 497 ntBASIC18.85■□□□□ 0.61
HMGN4O00479 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.85■□□□□ 0.61
HMGN4O00479 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.85■□□□□ 0.61
HMGN4O00479 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.85■□□□□ 0.61
HMGN4O00479 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.85■□□□□ 0.61
HMGN4O00479 MFSD11-216ENST00000590393 1141 ntBASIC18.85■□□□□ 0.61
HMGN4O00479 AC016405.3-201ENST00000607710 860 ntBASIC18.85■□□□□ 0.61
HMGN4O00479 AL356652.1-201ENST00000615962 565 ntBASIC18.85■□□□□ 0.61
HMGN4O00479 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.85■□□□□ 0.61
HMGN4O00479 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HMGN4O00479 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HMGN4O00479 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HMGN4O00479 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGN4O00479 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.84■□□□□ 0.61
HMGN4O00479 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
HMGN4O00479 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGN4O00479 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGN4O00479 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.84■□□□□ 0.61
HMGN4O00479 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGN4O00479 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGN4O00479 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC18.84■□□□□ 0.61
HMGN4O00479 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.84■□□□□ 0.61
HMGN4O00479 PGM5P4-201ENST00000421970 445 ntBASIC18.84■□□□□ 0.61
HMGN4O00479 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC18.84■□□□□ 0.61
HMGN4O00479 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.84■□□□□ 0.61
HMGN4O00479 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.84■□□□□ 0.61
HMGN4O00479 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
HMGN4O00479 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HMGN4O00479 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.84■□□□□ 0.61
HMGN4O00479 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.84■□□□□ 0.61
HMGN4O00479 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
HMGN4O00479 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGN4O00479 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
HMGN4O00479 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.84■□□□□ 0.61
HMGN4O00479 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGN4O00479 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGN4O00479 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGN4O00479 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HMGN4O00479 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HMGN4O00479 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HMGN4O00479 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HMGN4O00479 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
HMGN4O00479 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGN4O00479 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGN4O00479 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.83■□□□□ 0.6
HMGN4O00479 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HMGN4O00479 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.83■□□□□ 0.6
HMGN4O00479 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
HMGN4O00479 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGN4O00479 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGN4O00479 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.82■□□□□ 0.6
HMGN4O00479 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
HMGN4O00479 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGN4O00479 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGN4O00479 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGN4O00479 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGN4O00479 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.82■□□□□ 0.6
HMGN4O00479 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
HMGN4O00479 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HMGN4O00479 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.82■□□□□ 0.6
HMGN4O00479 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
HMGN4O00479 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGN4O00479 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms