Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.59■□□□□ 0.73
VPS4AQ9UN37 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS4AQ9UN37 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS4AQ9UN37 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.73
VPS4AQ9UN37 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS4AQ9UN37 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.58■□□□□ 0.72
VPS4AQ9UN37 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS4AQ9UN37 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS4AQ9UN37 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
VPS4AQ9UN37 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS4AQ9UN37 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS4AQ9UN37 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS4AQ9UN37 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS4AQ9UN37 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS4AQ9UN37 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS4AQ9UN37 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.58■□□□□ 0.72
VPS4AQ9UN37 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.58■□□□□ 0.72
VPS4AQ9UN37 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.72
VPS4AQ9UN37 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS4AQ9UN37 AC007225.1-201ENST00000566331 1836 ntBASIC19.58■□□□□ 0.72
VPS4AQ9UN37 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
VPS4AQ9UN37 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS4AQ9UN37 AC073314.1-201ENST00000568729 2216 ntBASIC19.57■□□□□ 0.72
VPS4AQ9UN37 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 MIR4758-201ENST00000577688 71 ntBASIC19.57■□□□□ 0.72
VPS4AQ9UN37 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4AQ9UN37 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 RNA5SP413-201ENST00000516373 109 ntBASIC19.56■□□□□ 0.72
VPS4AQ9UN37 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 MYCNOS-205ENST00000641950 531 ntBASIC19.56■□□□□ 0.72
VPS4AQ9UN37 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 AC061975.6-201ENST00000579045 1553 ntBASIC19.56■□□□□ 0.72
VPS4AQ9UN37 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS4AQ9UN37 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4AQ9UN37 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4AQ9UN37 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4AQ9UN37 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4AQ9UN37 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS4AQ9UN37 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
VPS4AQ9UN37 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4AQ9UN37 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4AQ9UN37 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4AQ9UN37 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.55■□□□□ 0.72
VPS4AQ9UN37 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4AQ9UN37 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
VPS4AQ9UN37 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS4AQ9UN37 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4AQ9UN37 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.55■□□□□ 0.72
VPS4AQ9UN37 AC133552.2-202ENST00000575694 574 ntBASIC19.55■□□□□ 0.72
VPS4AQ9UN37 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
VPS4AQ9UN37 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
VPS4AQ9UN37 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4AQ9UN37 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.55■□□□□ 0.72
VPS4AQ9UN37 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
VPS4AQ9UN37 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
VPS4AQ9UN37 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS4AQ9UN37 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS4AQ9UN37 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS4AQ9UN37 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS4AQ9UN37 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS4AQ9UN37 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS4AQ9UN37 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS4AQ9UN37 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms