Protein–RNA interactions for Protein: Q99536

VAT1, Synaptic vesicle membrane protein VAT-1 homolog, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAT1Q99536 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VAT1Q99536 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
VAT1Q99536 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
VAT1Q99536 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VAT1Q99536 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VAT1Q99536 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
VAT1Q99536 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VAT1Q99536 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VAT1Q99536 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VAT1Q99536 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VAT1Q99536 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VAT1Q99536 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.69■□□□□ 0.9
VAT1Q99536 OR10C1-204ENST00000622521 1039 ntBASIC20.69■□□□□ 0.9
VAT1Q99536 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
VAT1Q99536 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.69■□□□□ 0.9
VAT1Q99536 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.69■□□□□ 0.9
VAT1Q99536 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.69■□□□□ 0.9
VAT1Q99536 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.69■□□□□ 0.9
VAT1Q99536 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
VAT1Q99536 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
VAT1Q99536 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
VAT1Q99536 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.69■□□□□ 0.9
VAT1Q99536 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.68■□□□□ 0.9
VAT1Q99536 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
VAT1Q99536 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
VAT1Q99536 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
VAT1Q99536 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VAT1Q99536 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.68■□□□□ 0.9
VAT1Q99536 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.68■□□□□ 0.9
VAT1Q99536 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.68■□□□□ 0.9
VAT1Q99536 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.68■□□□□ 0.9
VAT1Q99536 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VAT1Q99536 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
VAT1Q99536 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VAT1Q99536 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
VAT1Q99536 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VAT1Q99536 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
VAT1Q99536 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VAT1Q99536 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VAT1Q99536 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VAT1Q99536 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VAT1Q99536 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VAT1Q99536 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VAT1Q99536 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
VAT1Q99536 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VAT1Q99536 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.67■□□□□ 0.9
VAT1Q99536 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.67■□□□□ 0.9
VAT1Q99536 AC092437.1-201ENST00000624794 1048 ntBASIC20.67■□□□□ 0.9
VAT1Q99536 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
VAT1Q99536 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VAT1Q99536 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VAT1Q99536 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.67■□□□□ 0.9
VAT1Q99536 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VAT1Q99536 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VAT1Q99536 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VAT1Q99536 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.67■□□□□ 0.9
VAT1Q99536 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.67■□□□□ 0.9
VAT1Q99536 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VAT1Q99536 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.66■□□□□ 0.9
VAT1Q99536 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VAT1Q99536 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VAT1Q99536 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VAT1Q99536 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.66■□□□□ 0.9
VAT1Q99536 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
VAT1Q99536 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VAT1Q99536 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.66■□□□□ 0.9
VAT1Q99536 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.66■□□□□ 0.9
VAT1Q99536 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VAT1Q99536 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.66■□□□□ 0.9
VAT1Q99536 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VAT1Q99536 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
VAT1Q99536 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VAT1Q99536 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
VAT1Q99536 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VAT1Q99536 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.65■□□□□ 0.9
VAT1Q99536 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VAT1Q99536 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VAT1Q99536 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.65■□□□□ 0.9
VAT1Q99536 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.65■□□□□ 0.9
VAT1Q99536 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.65■□□□□ 0.9
VAT1Q99536 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VAT1Q99536 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VAT1Q99536 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.65■□□□□ 0.9
VAT1Q99536 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
VAT1Q99536 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.65■□□□□ 0.9
VAT1Q99536 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.65■□□□□ 0.9
VAT1Q99536 AL512625.2-201ENST00000417533 625 ntBASIC20.65■□□□□ 0.9
VAT1Q99536 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.65■□□□□ 0.9
VAT1Q99536 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.65■□□□□ 0.9
VAT1Q99536 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
VAT1Q99536 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.65■□□□□ 0.9
VAT1Q99536 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.65■□□□□ 0.9
VAT1Q99536 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VAT1Q99536 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
VAT1Q99536 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VAT1Q99536 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
VAT1Q99536 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VAT1Q99536 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VAT1Q99536 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
VAT1Q99536 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms