Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 ZDHHC24-204ENST00000534073 1615 ntTSL 328.32■■■□□ 2.124e-7■■■■□ 25
UPF1Q92900 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC27.77■■■□□ 2.044e-7■■■■□ 25
UPF1Q92900 RCC1L-206ENST00000618102 950 ntTSL 223.69■■□□□ 1.384e-7■■■■□ 25
UPF1Q92900 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.174e-7■■■■□ 25
UPF1Q92900 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.136e-7■■■■□ 25
UPF1Q92900 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.046e-7■■■■□ 25
UPF1Q92900 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 06e-7■■■■□ 25
UPF1Q92900 AP3M2-209ENST00000520689 687 ntTSL 58.77□□□□□ -1.016e-7■■■■□ 25
UPF1Q92900 LRP3-204ENST00000592484 575 ntTSL 423.4■■□□□ 1.345e-8■■■■□ 25
UPF1Q92900 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.622e-6■■■■□ 25
UPF1Q92900 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC33.36■■■□□ 2.934e-6■■■■□ 25
UPF1Q92900 AL391244.1-208ENST00000453521 858 ntTSL 225.57■■□□□ 1.684e-6■■■■□ 25
UPF1Q92900 AL391244.1-202ENST00000444362 1747 ntTSL 1 (best)21.25■□□□□ 0.994e-6■■■■□ 25
UPF1Q92900 AL391244.1-203ENST00000418833 2196 ntTSL 218.58■□□□□ 0.564e-6■■■■□ 25
UPF1Q92900 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC18.44■□□□□ 0.544e-6■■■■□ 25
UPF1Q92900 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.514e-6■■■■□ 25
UPF1Q92900 GPRC5B-203ENST00000562348 2078 ntTSL 1 (best)17.2■□□□□ 0.344e-6■■■■□ 25
UPF1Q92900 AL391244.1-207ENST00000572242 2228 nt16.97■□□□□ 0.314e-6■■■■□ 25
UPF1Q92900 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.174e-6■■■■□ 25
UPF1Q92900 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.153e-7■■■■□ 25
UPF1Q92900 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.58■□□□□ 0.252e-7■■■■□ 25
UPF1Q92900 AVL9-202ENST00000409301 4336 ntTSL 5 BASIC13.26□□□□□ -0.292e-7■■■■□ 25
UPF1Q92900 AVL9-208ENST00000497020 677 ntTSL 57.19□□□□□ -1.262e-7■■■■□ 25
UPF1Q92900 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.342e-7■■■■□ 25
UPF1Q92900 TBX3-201ENST00000257566 4208 ntTSL 1 (best) BASIC12.25□□□□□ -0.452e-7■■■■□ 25
UPF1Q92900 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.087e-8■■■■□ 25
UPF1Q92900 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.19■□□□□ 0.987e-8■■■■□ 25
UPF1Q92900 SUPT16H-207ENST00000557394 2324 ntTSL 210.89□□□□□ -0.672e-8■■■■□ 25
UPF1Q92900 SUPT16H-201ENST00000216297 4684 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.082e-8■■■■□ 25
UPF1Q92900 NOL6-205ENST00000464829 1829 ntTSL 219.83■□□□□ 0.766e-7■■■■□ 25
UPF1Q92900 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.197e-7■■■■□ 25
UPF1Q92900 HDAC3-204ENST00000469207 829 ntTSL 318.5■□□□□ 0.557e-7■■■■□ 25
UPF1Q92900 HDAC3-205ENST00000469550 1952 ntTSL 1 (best)12.9□□□□□ -0.347e-7■■■■□ 25
UPF1Q92900 HFE-207ENST00000357618 5286 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.768e-7■■■■□ 24.9
UPF1Q92900 FOXK2-202ENST00000473637 3462 ntTSL 1 (best)22■■□□□ 1.111e-8■■■■□ 24.9
UPF1Q92900 FOXK2-205ENST00000529652 2199 ntTSL 217.74■□□□□ 0.431e-8■■■■□ 24.9
UPF1Q92900 SMARCD1-207ENST00000549526 401 ntTSL 514.2□□□□□ -0.141e-8■■■■□ 24.9
UPF1Q92900 TSTD2-201ENST00000341170 4320 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.553e-6■■■■□ 24.9
UPF1Q92900 TSTD2-205ENST00000375173 3076 nt8.06□□□□□ -1.123e-6■■■■□ 24.9
UPF1Q92900 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.424e-18■■■■□ 24.9
UPF1Q92900 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.284e-18■■■■□ 24.9
UPF1Q92900 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.024e-18■■■■□ 24.9
UPF1Q92900 MAP4-213ENST00000477765 284 ntTSL 315.75■□□□□ 0.112e-8■■■■□ 24.9
UPF1Q92900 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC17.28■□□□□ 0.367e-32■■■■□ 24.9
UPF1Q92900 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC15.16■□□□□ 0.027e-32■■■■□ 24.9
UPF1Q92900 TPM3-207ENST00000341372 2007 ntTSL 5 BASIC14.05□□□□□ -0.167e-32■■■■□ 24.9
UPF1Q92900 TPM3-213ENST00000368545 2147 ntTSL 1 (best)12.89□□□□□ -0.357e-32■■■■□ 24.9
UPF1Q92900 TPM3-212ENST00000368533 3131 ntTSL 1 (best) BASIC12.2□□□□□ -0.467e-32■■■■□ 24.9
UPF1Q92900 TPM3-223ENST00000611659 3149 ntTSL 3 BASIC11.3□□□□□ -0.67e-32■■■■□ 24.9
UPF1Q92900 TPM3-215ENST00000469717 4041 ntTSL 28.14□□□□□ -1.117e-32■■■■□ 24.9
UPF1Q92900 CCDC174-201ENST00000303688 2714 ntTSL 5 BASIC12.14□□□□□ -0.476e-7■■■■□ 24.9
UPF1Q92900 CCDC174-202ENST00000383794 2942 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.726e-7■■■■□ 24.9
UPF1Q92900 CCDC174-206ENST00000611584 2720 ntTSL 5 BASIC10.32□□□□□ -0.766e-7■■■■□ 24.9
UPF1Q92900 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.59□□□□□ -1.362e-6■■■■□ 24.9
UPF1Q92900 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.412e-6■■■■□ 24.9
UPF1Q92900 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.43e-7■■■■□ 24.9
UPF1Q92900 E2F4-208ENST00000567007 2615 ntTSL 223.48■■□□□ 1.353e-7■■■■□ 24.9
UPF1Q92900 PCTP-203ENST00000417982 2234 ntTSL 221.67■■□□□ 1.065e-9■■■■□ 24.9
UPF1Q92900 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.685e-9■■■■□ 24.9
UPF1Q92900 PCTP-206ENST00000573500 919 ntTSL 3 BASIC18.47■□□□□ 0.555e-9■■■■□ 24.9
UPF1Q92900 PCTP-202ENST00000325214 1856 ntTSL 1 (best) BASIC17.19■□□□□ 0.345e-9■■■■□ 24.9
UPF1Q92900 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC14.61□□□□□ -0.075e-9■■■■□ 24.9
UPF1Q92900 PCTP-205ENST00000572536 647 ntTSL 311.42□□□□□ -0.585e-9■■■■□ 24.9
UPF1Q92900 PCTP-208ENST00000576221 609 ntTSL 510.84□□□□□ -0.675e-9■■■■□ 24.9
UPF1Q92900 PCTP-204ENST00000571489 3932 ntTSL 1 (best)7.58□□□□□ -1.25e-9■■■■□ 24.9
UPF1Q92900 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.19■□□□□ 0.51e-9■■■■□ 24.8
UPF1Q92900 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.471e-9■■■■□ 24.8
UPF1Q92900 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.11e-9■■■■□ 24.8
UPF1Q92900 COL18A1-201ENST00000342220 3386 ntTSL 214.85□□□□□ -0.031e-9■■■■□ 24.8
UPF1Q92900 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.08■□□□□ 0.491e-6■■■■□ 24.8
UPF1Q92900 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.21e-6■■■■□ 24.8
UPF1Q92900 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.011e-6■■■■□ 24.8
UPF1Q92900 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC14.64□□□□□ -0.071e-6■■■■□ 24.8
UPF1Q92900 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.251e-6■■■■□ 24.8
UPF1Q92900 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.331e-8■■■■□ 24.8
UPF1Q92900 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.791e-8■■■■□ 24.8
UPF1Q92900 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.71e-8■■■■□ 24.8
UPF1Q92900 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.051e-8■■■■□ 24.8
UPF1Q92900 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.261e-8■■■■□ 24.8
UPF1Q92900 UBE2I-202ENST00000355803 3253 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.321e-8■■■■□ 24.8
UPF1Q92900 C20orf194-201ENST00000252032 6869 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.072e-11■■■■□ 24.8
UPF1Q92900 GOSR2-247ENST00000640871 1045 ntTSL 519.8■□□□□ 0.761e-13■■■■□ 24.8
UPF1Q92900 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC12.47□□□□□ -0.419e-9■■■■□ 24.8
UPF1Q92900 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.048e-7■■■■□ 24.8
UPF1Q92900 VCL-202ENST00000372755 6489 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.584e-21■■■■□ 24.8
UPF1Q92900 VCL-201ENST00000211998 5490 ntAPPRIS P4 TSL 1 (best) BASIC10.12□□□□□ -0.794e-21■■■■□ 24.8
UPF1Q92900 VCL-206ENST00000623461 7995 ntTSL 1 (best)8.51□□□□□ -1.054e-21■■■■□ 24.8
UPF1Q92900 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC33.95■■■■□ 3.036e-10■■■■□ 24.8
UPF1Q92900 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.826e-10■■■■□ 24.8
UPF1Q92900 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.43■□□□□ 0.78e-10■■■■□ 24.8
UPF1Q92900 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.298e-10■■■■□ 24.8
UPF1Q92900 AC020663.1-201ENST00000588099 556 ntTSL 4 BASIC16.82■□□□□ 0.288e-10■■■■□ 24.8
UPF1Q92900 ZNF500-207ENST00000591026 2397 nt15.89■□□□□ 0.138e-10■■■■□ 24.8
UPF1Q92900 ZNF500-205ENST00000588942 276 ntTSL 311.29□□□□□ -0.68e-10■■■■□ 24.8
UPF1Q92900 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC23.87■■□□□ 1.416e-8■■■■□ 24.8
UPF1Q92900 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC22.25■■□□□ 1.156e-8■■■■□ 24.8
UPF1Q92900 ADAP1-204ENST00000446141 2085 ntTSL 221.65■■□□□ 1.066e-8■■■■□ 24.8
UPF1Q92900 ADAP1-215ENST00000495809 2236 ntTSL 221.37■■□□□ 1.016e-8■■■■□ 24.8
UPF1Q92900 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.92■□□□□ 0.946e-8■■■■□ 24.8
UPF1Q92900 ADAP1-211ENST00000478000 2192 ntTSL 520.39■□□□□ 0.856e-8■■■■□ 24.8
Retrieved 100 of 15,879 protein–RNA pairs in 180.2 ms