Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.39■□□□□ 0.69
CACNA1AO00555 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.39■□□□□ 0.69
CACNA1AO00555 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CACNA1AO00555 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1AO00555 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.38■□□□□ 0.69
CACNA1AO00555 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1AO00555 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CACNA1AO00555 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC19.38■□□□□ 0.69
CACNA1AO00555 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.38■□□□□ 0.69
CACNA1AO00555 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1AO00555 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1AO00555 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1AO00555 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CACNA1AO00555 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1AO00555 ST7-202ENST00000323984 2142 ntTSL 5 BASIC19.38■□□□□ 0.69
CACNA1AO00555 ST7-207ENST00000393449 2127 ntTSL 5 BASIC19.38■□□□□ 0.69
CACNA1AO00555 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1AO00555 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CACNA1AO00555 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.38■□□□□ 0.69
CACNA1AO00555 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1AO00555 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC19.37■□□□□ 0.69
CACNA1AO00555 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
CACNA1AO00555 AL031985.4-201ENST00000642138 673 ntBASIC19.37■□□□□ 0.69
CACNA1AO00555 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1AO00555 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1AO00555 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
CACNA1AO00555 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1AO00555 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CACNA1AO00555 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CACNA1AO00555 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CACNA1AO00555 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.36■□□□□ 0.69
CACNA1AO00555 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.36■□□□□ 0.69
CACNA1AO00555 AL139125.2-201ENST00000623134 1869 ntBASIC19.36■□□□□ 0.69
CACNA1AO00555 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CACNA1AO00555 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CACNA1AO00555 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CACNA1AO00555 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC19.36■□□□□ 0.69
CACNA1AO00555 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.36■□□□□ 0.69
CACNA1AO00555 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.36■□□□□ 0.69
CACNA1AO00555 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.36■□□□□ 0.69
CACNA1AO00555 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.36■□□□□ 0.69
CACNA1AO00555 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CACNA1AO00555 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CACNA1AO00555 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CACNA1AO00555 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CACNA1AO00555 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
CACNA1AO00555 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CACNA1AO00555 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CACNA1AO00555 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CACNA1AO00555 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.35■□□□□ 0.69
CACNA1AO00555 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.35■□□□□ 0.69
CACNA1AO00555 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC19.35■□□□□ 0.69
CACNA1AO00555 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CACNA1AO00555 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CACNA1AO00555 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CACNA1AO00555 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.35■□□□□ 0.69
CACNA1AO00555 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
CACNA1AO00555 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.35■□□□□ 0.69
CACNA1AO00555 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.35■□□□□ 0.69
CACNA1AO00555 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CACNA1AO00555 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.34■□□□□ 0.69
CACNA1AO00555 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.34■□□□□ 0.69
CACNA1AO00555 ATP5G2P1-201ENST00000433580 426 ntBASIC19.34■□□□□ 0.69
CACNA1AO00555 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CACNA1AO00555 HOMER2P1-201ENST00000455653 964 ntBASIC19.34■□□□□ 0.69
CACNA1AO00555 UNC93B7-201ENST00000509439 705 ntBASIC19.34■□□□□ 0.69
CACNA1AO00555 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC19.34■□□□□ 0.69
CACNA1AO00555 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CACNA1AO00555 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CACNA1AO00555 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
CACNA1AO00555 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CACNA1AO00555 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CACNA1AO00555 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CACNA1AO00555 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.34■□□□□ 0.69
CACNA1AO00555 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CACNA1AO00555 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CACNA1AO00555 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CACNA1AO00555 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CACNA1AO00555 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.34■□□□□ 0.69
CACNA1AO00555 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CACNA1AO00555 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
CACNA1AO00555 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.34■□□□□ 0.69
CACNA1AO00555 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
CACNA1AO00555 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
CACNA1AO00555 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CACNA1AO00555 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CACNA1AO00555 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
CACNA1AO00555 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CACNA1AO00555 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CACNA1AO00555 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.34■□□□□ 0.69
CACNA1AO00555 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CACNA1AO00555 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CACNA1AO00555 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.33■□□□□ 0.69
CACNA1AO00555 NPAP1P7-201ENST00000613027 823 ntBASIC19.33■□□□□ 0.69
CACNA1AO00555 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.33■□□□□ 0.69
CACNA1AO00555 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CACNA1AO00555 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
CACNA1AO00555 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CACNA1AO00555 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.33■□□□□ 0.68
CACNA1AO00555 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms