Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 LINC01465-201ENST00000408887 1940 ntBASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 AL049812.1-201ENST00000432563 2267 ntBASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 AC092028.1-203ENST00000608262 953 ntBASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 AL691432.2-201ENST00000607222 2038 ntBASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV1-1A0A0B4J248 AC020916.1-201ENST00000587762 1774 ntBASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV1-1A0A0B4J248 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 STK25-204ENST00000405585 1643 ntTSL 2 BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC15.86■□□□□ 0.13
TRAV1-1A0A0B4J248 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 BX664725.1-201ENST00000438252 379 ntBASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 AC103834.1-201ENST00000520383 144 ntBASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 EXOG-217ENST00000630638 197 ntTSL 5 BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms