Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC27.34■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC27.34■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 GUSBP6-202ENST00000438529 1198 ntBASIC27.34■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 GCSHP5-201ENST00000443090 522 ntBASIC27.34■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC27.34■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC27.34■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC27.34■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 MED17-221ENST00000639724 2317 ntTSL 5 BASIC27.34■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 AFG3L1P-217ENST00000557444 2447 ntBASIC27.33■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC27.33■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 AC091799.1-201ENST00000422823 811 ntBASIC27.33■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC27.33■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC27.33■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC27.33■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC27.33■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 SLC29A4P1-201ENST00000398760 971 ntBASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 AC245052.3-201ENST00000450182 901 ntBASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 KRT18P21-201ENST00000515767 1272 ntBASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 TFG-210ENST00000620299 1289 ntTSL 5 BASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 AC120498.10-201ENST00000621827 505 ntBASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC27.31■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC27.31■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC27.31■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC27.31■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC27.31■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC27.31■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 AC011484.1-201ENST00000377652 1995 ntBASIC27.31■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC27.31■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC27.31■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC27.3■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC27.3■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC27.3■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 AL158047.1-201ENST00000445918 881 ntBASIC27.3■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC27.3■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC27.3■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC27.3■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC27.3■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC27.29■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC27.29■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC27.29■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 PLLP-204ENST00000569059 665 ntTSL 3 BASIC27.29■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 AL050303.2-201ENST00000619798 666 ntBASIC27.29■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 AC133041.1-202ENST00000642053 222 ntBASIC27.29■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC27.29■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC27.29■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 AP005212.1-201ENST00000581547 1997 ntBASIC27.29■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC27.29■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC27.28■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms