Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.42■□□□□ 0.54
HIF3AQ9Y2N7 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.42■□□□□ 0.54
HIF3AQ9Y2N7 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HIF3AQ9Y2N7 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HIF3AQ9Y2N7 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
HIF3AQ9Y2N7 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
HIF3AQ9Y2N7 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HIF3AQ9Y2N7 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HIF3AQ9Y2N7 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.42■□□□□ 0.54
HIF3AQ9Y2N7 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HIF3AQ9Y2N7 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
HIF3AQ9Y2N7 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.42■□□□□ 0.54
HIF3AQ9Y2N7 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
HIF3AQ9Y2N7 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HIF3AQ9Y2N7 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.41■□□□□ 0.54
HIF3AQ9Y2N7 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.4■□□□□ 0.54
HIF3AQ9Y2N7 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HIF3AQ9Y2N7 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HIF3AQ9Y2N7 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HIF3AQ9Y2N7 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.4■□□□□ 0.54
HIF3AQ9Y2N7 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
HIF3AQ9Y2N7 AC007322.3-201ENST00000426526 701 ntBASIC18.4■□□□□ 0.54
HIF3AQ9Y2N7 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.4■□□□□ 0.54
HIF3AQ9Y2N7 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HIF3AQ9Y2N7 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HIF3AQ9Y2N7 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18.4■□□□□ 0.54
HIF3AQ9Y2N7 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.4■□□□□ 0.54
HIF3AQ9Y2N7 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.4■□□□□ 0.54
HIF3AQ9Y2N7 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HIF3AQ9Y2N7 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
HIF3AQ9Y2N7 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HIF3AQ9Y2N7 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HIF3AQ9Y2N7 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HIF3AQ9Y2N7 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
HIF3AQ9Y2N7 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
HIF3AQ9Y2N7 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
HIF3AQ9Y2N7 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
HIF3AQ9Y2N7 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HIF3AQ9Y2N7 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
HIF3AQ9Y2N7 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HIF3AQ9Y2N7 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.39■□□□□ 0.53
HIF3AQ9Y2N7 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
HIF3AQ9Y2N7 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.39■□□□□ 0.53
HIF3AQ9Y2N7 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC18.39■□□□□ 0.53
HIF3AQ9Y2N7 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.39■□□□□ 0.53
HIF3AQ9Y2N7 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.39■□□□□ 0.53
HIF3AQ9Y2N7 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.39■□□□□ 0.53
HIF3AQ9Y2N7 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.39■□□□□ 0.53
HIF3AQ9Y2N7 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.39■□□□□ 0.53
HIF3AQ9Y2N7 UBE2DNL-204ENST00000602536 740 ntBASIC18.39■□□□□ 0.53
HIF3AQ9Y2N7 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
HIF3AQ9Y2N7 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HIF3AQ9Y2N7 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HIF3AQ9Y2N7 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
HIF3AQ9Y2N7 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HIF3AQ9Y2N7 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HIF3AQ9Y2N7 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 MYCNOS-205ENST00000641950 531 ntBASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
HIF3AQ9Y2N7 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms