Protein–RNA interactions for Protein: Q99958

FOXC2, Forkhead box protein C2, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC2Q99958 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC17.24■□□□□ 0.35
FOXC2Q99958 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXC2Q99958 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXC2Q99958 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.24■□□□□ 0.35
FOXC2Q99958 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC17.24■□□□□ 0.35
FOXC2Q99958 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
FOXC2Q99958 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXC2Q99958 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXC2Q99958 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXC2Q99958 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXC2Q99958 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXC2Q99958 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
FOXC2Q99958 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXC2Q99958 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXC2Q99958 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC17.23■□□□□ 0.35
FOXC2Q99958 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXC2Q99958 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.23■□□□□ 0.35
FOXC2Q99958 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXC2Q99958 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17.23■□□□□ 0.35
FOXC2Q99958 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.23■□□□□ 0.35
FOXC2Q99958 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.23■□□□□ 0.35
FOXC2Q99958 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.23■□□□□ 0.35
FOXC2Q99958 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.23■□□□□ 0.35
FOXC2Q99958 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.23■□□□□ 0.35
FOXC2Q99958 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.23■□□□□ 0.35
FOXC2Q99958 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
FOXC2Q99958 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
FOXC2Q99958 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXC2Q99958 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXC2Q99958 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXC2Q99958 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.23■□□□□ 0.35
FOXC2Q99958 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXC2Q99958 HTR7P1-201ENST00000538670 1336 ntBASIC17.22■□□□□ 0.35
FOXC2Q99958 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC2Q99958 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC2Q99958 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC2Q99958 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC2Q99958 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC17.22■□□□□ 0.35
FOXC2Q99958 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC2Q99958 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
FOXC2Q99958 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
FOXC2Q99958 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.22■□□□□ 0.35
FOXC2Q99958 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
FOXC2Q99958 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
FOXC2Q99958 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC2Q99958 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC2Q99958 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
FOXC2Q99958 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC2Q99958 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC2Q99958 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC2Q99958 AC139530.1-201ENST00000575312 1977 ntBASIC17.22■□□□□ 0.35
FOXC2Q99958 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.21■□□□□ 0.35
FOXC2Q99958 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.21■□□□□ 0.35
FOXC2Q99958 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC2Q99958 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC17.21■□□□□ 0.35
FOXC2Q99958 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
FOXC2Q99958 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
FOXC2Q99958 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC2Q99958 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC2Q99958 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC17.21■□□□□ 0.35
FOXC2Q99958 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC2Q99958 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC2Q99958 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC2Q99958 UNC93B2-201ENST00000285383 730 ntBASIC17.21■□□□□ 0.35
FOXC2Q99958 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
FOXC2Q99958 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
FOXC2Q99958 KRT16P5-201ENST00000455284 522 ntBASIC17.21■□□□□ 0.35
FOXC2Q99958 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
FOXC2Q99958 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.21■□□□□ 0.35
FOXC2Q99958 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.21■□□□□ 0.35
FOXC2Q99958 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.21■□□□□ 0.35
FOXC2Q99958 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.21■□□□□ 0.35
FOXC2Q99958 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.21■□□□□ 0.35
FOXC2Q99958 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
FOXC2Q99958 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC17.21■□□□□ 0.35
FOXC2Q99958 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC2Q99958 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC2Q99958 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC2Q99958 AC087633.2-202ENST00000565166 1439 ntBASIC17.21■□□□□ 0.34
FOXC2Q99958 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXC2Q99958 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXC2Q99958 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXC2Q99958 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXC2Q99958 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
FOXC2Q99958 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
FOXC2Q99958 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXC2Q99958 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXC2Q99958 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
FOXC2Q99958 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
FOXC2Q99958 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXC2Q99958 LINC01568-207ENST00000641790 1380 ntBASIC17.2■□□□□ 0.34
FOXC2Q99958 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC17.2■□□□□ 0.34
FOXC2Q99958 PGM5P4-201ENST00000421970 445 ntBASIC17.2■□□□□ 0.34
FOXC2Q99958 AL137013.1-201ENST00000432946 1228 ntBASIC17.2■□□□□ 0.34
FOXC2Q99958 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.2■□□□□ 0.34
FOXC2Q99958 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXC2Q99958 RBM17P1-201ENST00000453646 1190 ntBASIC17.2■□□□□ 0.34
FOXC2Q99958 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC17.2■□□□□ 0.34
FOXC2Q99958 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC17.2■□□□□ 0.34
FOXC2Q99958 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms