Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 AC012313.1-201ENST00000593393 3059 ntBASIC12.81□□□□□ -0.36
LINC00643Q86TS7 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 AP004607.7-201ENST00000527152 1677 ntBASIC12.81□□□□□ -0.36
LINC00643Q86TS7 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 AC139713.2-201ENST00000641328 2723 ntBASIC12.81□□□□□ -0.36
LINC00643Q86TS7 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC12.81□□□□□ -0.36
LINC00643Q86TS7 AC141586.5-201ENST00000624546 2050 ntBASIC12.81□□□□□ -0.36
LINC00643Q86TS7 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 PLK5-205ENST00000642079 1969 ntBASIC12.8□□□□□ -0.36
LINC00643Q86TS7 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 TCF3P1-201ENST00000423021 1937 ntBASIC12.8□□□□□ -0.36
LINC00643Q86TS7 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC12.8□□□□□ -0.36
LINC00643Q86TS7 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 ERF-202ENST00000440177 2032 ntTSL 2 BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 CAHM-201ENST00000604200 896 ntBASIC12.79□□□□□ -0.36
LINC00643Q86TS7 NOC2LP2-201ENST00000407594 1944 ntBASIC12.79□□□□□ -0.36
LINC00643Q86TS7 AC026471.6-201ENST00000622954 1905 ntBASIC12.79□□□□□ -0.36
LINC00643Q86TS7 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00643Q86TS7 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC12.78□□□□□ -0.36
LINC00643Q86TS7 AC135050.7-201ENST00000624508 2218 ntBASIC12.78□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms