Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SSX3Q99909 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SSX3Q99909 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SSX3Q99909 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
SSX3Q99909 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SSX3Q99909 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SSX3Q99909 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SSX3Q99909 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SSX3Q99909 AC087741.3-201ENST00000624270 1347 ntBASIC21.65■■□□□ 1.06
SSX3Q99909 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
SSX3Q99909 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC21.65■■□□□ 1.06
SSX3Q99909 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SSX3Q99909 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SSX3Q99909 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC21.64■■□□□ 1.05
SSX3Q99909 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SSX3Q99909 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC21.64■■□□□ 1.05
SSX3Q99909 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
SSX3Q99909 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SSX3Q99909 RPS2-209ENST00000529806 993 ntTSL 3 BASIC21.62■■□□□ 1.05
SSX3Q99909 AC044849.2-201ENST00000606596 710 ntBASIC21.61■■□□□ 1.05
SSX3Q99909 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SSX3Q99909 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SSX3Q99909 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
SSX3Q99909 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC21.6■■□□□ 1.05
SSX3Q99909 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SSX3Q99909 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SSX3Q99909 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SSX3Q99909 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SSX3Q99909 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SSX3Q99909 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
SSX3Q99909 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SSX3Q99909 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SSX3Q99909 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.57■■□□□ 1.04
SSX3Q99909 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SSX3Q99909 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC21.56■■□□□ 1.04
SSX3Q99909 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SSX3Q99909 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SSX3Q99909 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.56■■□□□ 1.04
SSX3Q99909 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
SSX3Q99909 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
SSX3Q99909 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SSX3Q99909 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SSX3Q99909 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SSX3Q99909 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SSX3Q99909 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
SSX3Q99909 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
SSX3Q99909 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC21.54■■□□□ 1.04
SSX3Q99909 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC21.54■■□□□ 1.04
SSX3Q99909 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SSX3Q99909 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SSX3Q99909 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SSX3Q99909 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SSX3Q99909 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SSX3Q99909 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.03
SSX3Q99909 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SSX3Q99909 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SSX3Q99909 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SSX3Q99909 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SSX3Q99909 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC21.5■■□□□ 1.03
SSX3Q99909 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC21.5■■□□□ 1.03
SSX3Q99909 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SSX3Q99909 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SSX3Q99909 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
SSX3Q99909 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SSX3Q99909 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SSX3Q99909 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SSX3Q99909 BOD1-206ENST00000480951 814 ntTSL 2 BASIC21.48■■□□□ 1.03
SSX3Q99909 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SSX3Q99909 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC21.48■■□□□ 1.03
SSX3Q99909 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SSX3Q99909 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.47■■□□□ 1.03
SSX3Q99909 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC21.46■■□□□ 1.03
SSX3Q99909 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC21.46■■□□□ 1.03
SSX3Q99909 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SSX3Q99909 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SSX3Q99909 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SSX3Q99909 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SSX3Q99909 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
SSX3Q99909 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SSX3Q99909 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC21.44■■□□□ 1.02
SSX3Q99909 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SSX3Q99909 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SSX3Q99909 MLEC-202ENST00000412616 841 ntTSL 3 BASIC21.43■■□□□ 1.02
SSX3Q99909 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SSX3Q99909 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SSX3Q99909 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SSX3Q99909 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SSX3Q99909 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SSX3Q99909 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SSX3Q99909 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC21.41■■□□□ 1.02
SSX3Q99909 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
SSX3Q99909 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SSX3Q99909 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SSX3Q99909 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.39■■□□□ 1.02
SSX3Q99909 ABHD17AP4-201ENST00000411545 909 ntBASIC21.39■■□□□ 1.01
SSX3Q99909 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC21.39■■□□□ 1.01
SSX3Q99909 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SSX3Q99909 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SSX3Q99909 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SSX3Q99909 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms