Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
CDX2Q99626 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC28.74■■■□□ 2.19
CDX2Q99626 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
CDX2Q99626 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
CDX2Q99626 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
CDX2Q99626 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
CDX2Q99626 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC28.72■■■□□ 2.19
CDX2Q99626 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC28.72■■■□□ 2.19
CDX2Q99626 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC28.71■■■□□ 2.19
CDX2Q99626 AL033527.3-201ENST00000566366 1196 ntBASIC28.71■■■□□ 2.19
CDX2Q99626 CHML-204ENST00000638121 920 ntTSL 2 BASIC28.71■■■□□ 2.19
CDX2Q99626 CEP120-209ENST00000515110 606 ntTSL 3 BASIC28.7■■■□□ 2.18
CDX2Q99626 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC28.69■■■□□ 2.18
CDX2Q99626 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
CDX2Q99626 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
CDX2Q99626 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC28.67■■■□□ 2.18
CDX2Q99626 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CDX2Q99626 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC28.67■■■□□ 2.18
CDX2Q99626 AC008813.1-201ENST00000536597 885 ntBASIC28.67■■■□□ 2.18
CDX2Q99626 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC28.66■■■□□ 2.18
CDX2Q99626 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC28.66■■■□□ 2.18
CDX2Q99626 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
CDX2Q99626 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC28.63■■■□□ 2.17
CDX2Q99626 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC28.62■■■□□ 2.17
CDX2Q99626 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC28.62■■■□□ 2.17
CDX2Q99626 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
CDX2Q99626 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CDX2Q99626 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC28.6■■■□□ 2.17
CDX2Q99626 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC28.6■■■□□ 2.17
CDX2Q99626 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
CDX2Q99626 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
CDX2Q99626 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC28.59■■■□□ 2.17
CDX2Q99626 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
CDX2Q99626 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
CDX2Q99626 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC28.58■■■□□ 2.17
CDX2Q99626 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
CDX2Q99626 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC28.57■■■□□ 2.16
CDX2Q99626 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
CDX2Q99626 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC28.55■■■□□ 2.16
CDX2Q99626 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
CDX2Q99626 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
CDX2Q99626 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
CDX2Q99626 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC28.54■■■□□ 2.16
CDX2Q99626 CHST11-202ENST00000546689 756 ntTSL 2 BASIC28.51■■■□□ 2.15
CDX2Q99626 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC28.51■■■□□ 2.15
CDX2Q99626 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC28.51■■■□□ 2.15
CDX2Q99626 AC022413.1-201ENST00000624602 984 ntBASIC28.5■■■□□ 2.15
CDX2Q99626 AC019069.1-201ENST00000610008 1333 ntBASIC28.49■■■□□ 2.15
CDX2Q99626 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
CDX2Q99626 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC28.46■■■□□ 2.15
CDX2Q99626 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC28.46■■■□□ 2.15
CDX2Q99626 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC28.46■■■□□ 2.15
CDX2Q99626 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
CDX2Q99626 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
CDX2Q99626 RARRES2P1-201ENST00000474487 481 ntBASIC28.45■■■□□ 2.14
CDX2Q99626 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
CDX2Q99626 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC28.43■■■□□ 2.14
CDX2Q99626 HES4-202ENST00000428771 1040 ntTSL 2 BASIC28.43■■■□□ 2.14
CDX2Q99626 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
CDX2Q99626 GFER-205ENST00000569451 517 ntTSL 5 BASIC28.41■■■□□ 2.14
CDX2Q99626 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
CDX2Q99626 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
CDX2Q99626 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
CDX2Q99626 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
CDX2Q99626 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC28.39■■■□□ 2.14
CDX2Q99626 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC28.38■■■□□ 2.13
CDX2Q99626 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC28.38■■■□□ 2.13
CDX2Q99626 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
CDX2Q99626 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC28.38■■■□□ 2.13
CDX2Q99626 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
CDX2Q99626 U85056.1-201ENST00000616429 682 ntBASIC28.38■■■□□ 2.13
CDX2Q99626 EI24-212ENST00000615917 1407 ntTSL 2 BASIC28.37■■■□□ 2.13
CDX2Q99626 AL592295.1-201ENST00000400984 884 ntBASIC28.37■■■□□ 2.13
CDX2Q99626 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC28.37■■■□□ 2.13
CDX2Q99626 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC28.35■■■□□ 2.13
CDX2Q99626 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC28.35■■■□□ 2.13
CDX2Q99626 TSPY13P-201ENST00000338964 914 ntBASIC28.34■■■□□ 2.13
CDX2Q99626 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CDX2Q99626 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC28.33■■■□□ 2.13
CDX2Q99626 MTURN-203ENST00000409688 843 ntTSL 2 BASIC28.33■■■□□ 2.13
CDX2Q99626 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC28.33■■■□□ 2.13
CDX2Q99626 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
CDX2Q99626 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC28.33■■■□□ 2.13
CDX2Q99626 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC28.33■■■□□ 2.12
CDX2Q99626 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CDX2Q99626 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
CDX2Q99626 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
CDX2Q99626 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
CDX2Q99626 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
CDX2Q99626 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
CDX2Q99626 HYI-213ENST00000583037 1322 ntTSL 5 BASIC28.29■■■□□ 2.12
CDX2Q99626 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
CDX2Q99626 AC004987.1-201ENST00000428627 508 ntBASIC28.27■■■□□ 2.12
CDX2Q99626 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
CDX2Q99626 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC28.25■■■□□ 2.11
CDX2Q99626 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC28.25■■■□□ 2.11
CDX2Q99626 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC28.25■■■□□ 2.11
CDX2Q99626 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC28.24■■■□□ 2.11
CDX2Q99626 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
CDX2Q99626 ATP5G2P3-201ENST00000429083 425 ntBASIC28.24■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms