Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
VPS13AQ96RL7 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
VPS13AQ96RL7 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
VPS13AQ96RL7 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
VPS13AQ96RL7 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC26.79■■□□□ 1.88
VPS13AQ96RL7 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC26.79■■□□□ 1.88
VPS13AQ96RL7 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC26.79■■□□□ 1.88
VPS13AQ96RL7 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC26.77■■□□□ 1.88
VPS13AQ96RL7 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC26.76■■□□□ 1.87
VPS13AQ96RL7 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC26.76■■□□□ 1.87
VPS13AQ96RL7 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
VPS13AQ96RL7 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
VPS13AQ96RL7 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC26.76■■□□□ 1.87
VPS13AQ96RL7 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
VPS13AQ96RL7 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
VPS13AQ96RL7 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
VPS13AQ96RL7 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
VPS13AQ96RL7 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
VPS13AQ96RL7 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
VPS13AQ96RL7 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
VPS13AQ96RL7 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC26.74■■□□□ 1.87
VPS13AQ96RL7 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
VPS13AQ96RL7 AC018358.1-201ENST00000631079 1402 ntBASIC26.73■■□□□ 1.87
VPS13AQ96RL7 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC26.73■■□□□ 1.87
VPS13AQ96RL7 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
VPS13AQ96RL7 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC26.71■■□□□ 1.87
VPS13AQ96RL7 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
VPS13AQ96RL7 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
VPS13AQ96RL7 AC012354.3-201ENST00000623734 483 ntBASIC26.7■■□□□ 1.87
VPS13AQ96RL7 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
VPS13AQ96RL7 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
VPS13AQ96RL7 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC26.69■■□□□ 1.86
VPS13AQ96RL7 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
VPS13AQ96RL7 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC26.68■■□□□ 1.86
VPS13AQ96RL7 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC26.68■■□□□ 1.86
VPS13AQ96RL7 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC26.68■■□□□ 1.86
VPS13AQ96RL7 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
VPS13AQ96RL7 AC008813.1-201ENST00000536597 885 ntBASIC26.68■■□□□ 1.86
VPS13AQ96RL7 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC26.67■■□□□ 1.86
VPS13AQ96RL7 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC26.66■■□□□ 1.86
VPS13AQ96RL7 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC26.66■■□□□ 1.86
VPS13AQ96RL7 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC26.64■■□□□ 1.86
VPS13AQ96RL7 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC26.64■■□□□ 1.86
VPS13AQ96RL7 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
VPS13AQ96RL7 AL033527.3-201ENST00000566366 1196 ntBASIC26.64■■□□□ 1.85
VPS13AQ96RL7 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
VPS13AQ96RL7 CEP120-209ENST00000515110 606 ntTSL 3 BASIC26.62■■□□□ 1.85
VPS13AQ96RL7 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
VPS13AQ96RL7 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
VPS13AQ96RL7 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC26.62■■□□□ 1.85
VPS13AQ96RL7 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
VPS13AQ96RL7 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
VPS13AQ96RL7 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
VPS13AQ96RL7 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC26.6■■□□□ 1.85
VPS13AQ96RL7 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
VPS13AQ96RL7 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC26.59■■□□□ 1.85
VPS13AQ96RL7 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
VPS13AQ96RL7 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
VPS13AQ96RL7 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC26.58■■□□□ 1.85
VPS13AQ96RL7 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC26.58■■□□□ 1.84
VPS13AQ96RL7 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
VPS13AQ96RL7 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
VPS13AQ96RL7 AC019069.1-201ENST00000610008 1333 ntBASIC26.56■■□□□ 1.84
VPS13AQ96RL7 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC26.55■■□□□ 1.84
VPS13AQ96RL7 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
VPS13AQ96RL7 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC26.54■■□□□ 1.84
VPS13AQ96RL7 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
VPS13AQ96RL7 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC26.53■■□□□ 1.84
VPS13AQ96RL7 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC26.53■■□□□ 1.84
VPS13AQ96RL7 TPT1-202ENST00000379055 948 ntTSL 2 BASIC26.52■■□□□ 1.84
VPS13AQ96RL7 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC26.52■■□□□ 1.84
VPS13AQ96RL7 AL592295.1-201ENST00000400984 884 ntBASIC26.52■■□□□ 1.84
VPS13AQ96RL7 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
VPS13AQ96RL7 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
VPS13AQ96RL7 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC26.5■■□□□ 1.83
VPS13AQ96RL7 CHML-204ENST00000638121 920 ntTSL 2 BASIC26.5■■□□□ 1.83
VPS13AQ96RL7 TSPY13P-201ENST00000338964 914 ntBASIC26.49■■□□□ 1.83
VPS13AQ96RL7 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC26.49■■□□□ 1.83
VPS13AQ96RL7 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
VPS13AQ96RL7 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
VPS13AQ96RL7 GFER-205ENST00000569451 517 ntTSL 5 BASIC26.49■■□□□ 1.83
VPS13AQ96RL7 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC26.48■■□□□ 1.83
VPS13AQ96RL7 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
VPS13AQ96RL7 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC26.47■■□□□ 1.83
VPS13AQ96RL7 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC26.47■■□□□ 1.83
VPS13AQ96RL7 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
VPS13AQ96RL7 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
VPS13AQ96RL7 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
VPS13AQ96RL7 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
VPS13AQ96RL7 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC26.46■■□□□ 1.83
VPS13AQ96RL7 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC26.45■■□□□ 1.83
VPS13AQ96RL7 MTURN-203ENST00000409688 843 ntTSL 2 BASIC26.44■■□□□ 1.82
VPS13AQ96RL7 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
VPS13AQ96RL7 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC26.43■■□□□ 1.82
VPS13AQ96RL7 HYI-213ENST00000583037 1322 ntTSL 5 BASIC26.42■■□□□ 1.82
VPS13AQ96RL7 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
VPS13AQ96RL7 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
VPS13AQ96RL7 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
VPS13AQ96RL7 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
VPS13AQ96RL7 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms