Protein–RNA interactions for Protein: A7MD48

SRRM4, Serine/arginine repetitive matrix protein 4, humanhuman

Known RBP Predictions only

Length 611 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM4A7MD48 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SRRM4A7MD48 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SRRM4A7MD48 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SRRM4A7MD48 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SRRM4A7MD48 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SRRM4A7MD48 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SRRM4A7MD48 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC21.15■□□□□ 0.98
SRRM4A7MD48 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC21.15■□□□□ 0.98
SRRM4A7MD48 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
SRRM4A7MD48 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
SRRM4A7MD48 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SRRM4A7MD48 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SRRM4A7MD48 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SRRM4A7MD48 DENR-202ENST00000455982 1052 ntTSL 5 BASIC21.14■□□□□ 0.97
SRRM4A7MD48 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SRRM4A7MD48 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SRRM4A7MD48 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
SRRM4A7MD48 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SRRM4A7MD48 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SRRM4A7MD48 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
SRRM4A7MD48 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
SRRM4A7MD48 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC21.11■□□□□ 0.97
SRRM4A7MD48 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SRRM4A7MD48 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SRRM4A7MD48 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SRRM4A7MD48 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SRRM4A7MD48 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SRRM4A7MD48 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SRRM4A7MD48 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SRRM4A7MD48 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SRRM4A7MD48 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SRRM4A7MD48 AL139393.2-201ENST00000608721 2025 ntBASIC21.09■□□□□ 0.97
SRRM4A7MD48 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SRRM4A7MD48 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
SRRM4A7MD48 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SRRM4A7MD48 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SRRM4A7MD48 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SRRM4A7MD48 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC21.07■□□□□ 0.96
SRRM4A7MD48 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SRRM4A7MD48 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC21.06■□□□□ 0.96
SRRM4A7MD48 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SRRM4A7MD48 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SRRM4A7MD48 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SRRM4A7MD48 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SRRM4A7MD48 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SRRM4A7MD48 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SRRM4A7MD48 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SRRM4A7MD48 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SRRM4A7MD48 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
SRRM4A7MD48 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SRRM4A7MD48 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
SRRM4A7MD48 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC21.02■□□□□ 0.96
SRRM4A7MD48 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC21.02■□□□□ 0.96
SRRM4A7MD48 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SRRM4A7MD48 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.02■□□□□ 0.96
SRRM4A7MD48 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC21.01■□□□□ 0.95
SRRM4A7MD48 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SRRM4A7MD48 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SRRM4A7MD48 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SRRM4A7MD48 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
SRRM4A7MD48 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC20.99■□□□□ 0.95
SRRM4A7MD48 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
SRRM4A7MD48 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SRRM4A7MD48 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SRRM4A7MD48 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SRRM4A7MD48 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SRRM4A7MD48 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SRRM4A7MD48 MIR762-201ENST00000390236 83 ntBASIC20.97■□□□□ 0.95
SRRM4A7MD48 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SRRM4A7MD48 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC20.97■□□□□ 0.95
SRRM4A7MD48 SUZ12P1-203ENST00000578195 985 ntBASIC20.97■□□□□ 0.95
SRRM4A7MD48 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SRRM4A7MD48 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SRRM4A7MD48 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
SRRM4A7MD48 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC20.96■□□□□ 0.95
SRRM4A7MD48 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SRRM4A7MD48 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.95
SRRM4A7MD48 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC20.95■□□□□ 0.94
SRRM4A7MD48 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SRRM4A7MD48 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SRRM4A7MD48 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC20.95■□□□□ 0.94
SRRM4A7MD48 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SRRM4A7MD48 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC20.94■□□□□ 0.94
SRRM4A7MD48 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
SRRM4A7MD48 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SRRM4A7MD48 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SRRM4A7MD48 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC20.93■□□□□ 0.94
SRRM4A7MD48 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC20.92■□□□□ 0.94
SRRM4A7MD48 CHML-205ENST00000638160 705 ntTSL 3 BASIC20.92■□□□□ 0.94
SRRM4A7MD48 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SRRM4A7MD48 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SRRM4A7MD48 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SRRM4A7MD48 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC20.91■□□□□ 0.94
SRRM4A7MD48 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
SRRM4A7MD48 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SRRM4A7MD48 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.94
SRRM4A7MD48 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
SRRM4A7MD48 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SRRM4A7MD48 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SRRM4A7MD48 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms