Protein–RNA interactions for Protein: Q9Y3Q4

HCN4, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4, humanhuman

Predictions only

Length 1,203 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCN4Q9Y3Q4 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
HCN4Q9Y3Q4 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 AC092068.2-201ENST00000590491 1708 ntBASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 AL353803.4-201ENST00000565882 1934 ntBASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 FAM21FP-204ENST00000608637 956 ntBASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 AC006538.3-201ENST00000612495 578 ntBASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.04■□□□□ 0.96
HCN4Q9Y3Q4 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HCN4Q9Y3Q4 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HCN4Q9Y3Q4 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
HCN4Q9Y3Q4 DUSP8P3-201ENST00000399571 1760 ntBASIC21.03■□□□□ 0.96
HCN4Q9Y3Q4 UNC93B2-201ENST00000285383 730 ntBASIC21.03■□□□□ 0.96
HCN4Q9Y3Q4 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.03■□□□□ 0.96
HCN4Q9Y3Q4 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
HCN4Q9Y3Q4 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
HCN4Q9Y3Q4 AC009947.2-201ENST00000444014 672 ntBASIC21.03■□□□□ 0.96
HCN4Q9Y3Q4 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.03■□□□□ 0.96
HCN4Q9Y3Q4 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.03■□□□□ 0.96
HCN4Q9Y3Q4 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC21.03■□□□□ 0.96
HCN4Q9Y3Q4 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
HCN4Q9Y3Q4 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HCN4Q9Y3Q4 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
HCN4Q9Y3Q4 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.03■□□□□ 0.96
HCN4Q9Y3Q4 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HCN4Q9Y3Q4 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HCN4Q9Y3Q4 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
HCN4Q9Y3Q4 LIN28AP1-201ENST00000429574 405 ntBASIC21.02■□□□□ 0.96
HCN4Q9Y3Q4 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC21.02■□□□□ 0.96
HCN4Q9Y3Q4 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
HCN4Q9Y3Q4 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC21.02■□□□□ 0.96
HCN4Q9Y3Q4 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
HCN4Q9Y3Q4 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
HCN4Q9Y3Q4 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HCN4Q9Y3Q4 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.96
HCN4Q9Y3Q4 KRT8P9-201ENST00000558927 1449 ntBASIC21.02■□□□□ 0.96
HCN4Q9Y3Q4 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
HCN4Q9Y3Q4 AP004607.7-201ENST00000527152 1677 ntBASIC21.02■□□□□ 0.95
HCN4Q9Y3Q4 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
HCN4Q9Y3Q4 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.01■□□□□ 0.95
HCN4Q9Y3Q4 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HCN4Q9Y3Q4 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HCN4Q9Y3Q4 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC21.01■□□□□ 0.95
HCN4Q9Y3Q4 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC21.01■□□□□ 0.95
HCN4Q9Y3Q4 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC21.01■□□□□ 0.95
HCN4Q9Y3Q4 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC21.01■□□□□ 0.95
HCN4Q9Y3Q4 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.01■□□□□ 0.95
HCN4Q9Y3Q4 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC21.01■□□□□ 0.95
HCN4Q9Y3Q4 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
HCN4Q9Y3Q4 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.01■□□□□ 0.95
HCN4Q9Y3Q4 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.01■□□□□ 0.95
HCN4Q9Y3Q4 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HCN4Q9Y3Q4 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.01■□□□□ 0.95
HCN4Q9Y3Q4 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.01■□□□□ 0.95
HCN4Q9Y3Q4 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HCN4Q9Y3Q4 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21■□□□□ 0.95
HCN4Q9Y3Q4 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC21■□□□□ 0.95
HCN4Q9Y3Q4 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
HCN4Q9Y3Q4 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HCN4Q9Y3Q4 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21■□□□□ 0.95
HCN4Q9Y3Q4 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21■□□□□ 0.95
HCN4Q9Y3Q4 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
HCN4Q9Y3Q4 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21■□□□□ 0.95
HCN4Q9Y3Q4 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
HCN4Q9Y3Q4 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21■□□□□ 0.95
HCN4Q9Y3Q4 MCRIP2P1-201ENST00000394346 511 ntBASIC21■□□□□ 0.95
HCN4Q9Y3Q4 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21■□□□□ 0.95
HCN4Q9Y3Q4 ATP5G1P1-201ENST00000448724 379 ntBASIC21■□□□□ 0.95
HCN4Q9Y3Q4 RBM17P1-201ENST00000453646 1190 ntBASIC21■□□□□ 0.95
HCN4Q9Y3Q4 TMA16-209ENST00000513272 803 ntTSL 2 BASIC21■□□□□ 0.95
HCN4Q9Y3Q4 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
HCN4Q9Y3Q4 AL031963.3-201ENST00000606441 850 ntBASIC21■□□□□ 0.95
HCN4Q9Y3Q4 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21■□□□□ 0.95
HCN4Q9Y3Q4 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
HCN4Q9Y3Q4 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HCN4Q9Y3Q4 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21■□□□□ 0.95
HCN4Q9Y3Q4 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
HCN4Q9Y3Q4 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HCN4Q9Y3Q4 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HCN4Q9Y3Q4 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HCN4Q9Y3Q4 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HCN4Q9Y3Q4 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HCN4Q9Y3Q4 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HCN4Q9Y3Q4 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
HCN4Q9Y3Q4 MIR1238-201ENST00000408483 83 ntBASIC20.99■□□□□ 0.95
HCN4Q9Y3Q4 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.99■□□□□ 0.95
HCN4Q9Y3Q4 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms