Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VCANP13611 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
VCANP13611 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.38■■□□□ 1.01
VCANP13611 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
VCANP13611 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.38■■□□□ 1.01
VCANP13611 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VCANP13611 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VCANP13611 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.38■■□□□ 1.01
VCANP13611 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VCANP13611 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.38■■□□□ 1.01
VCANP13611 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VCANP13611 KRT18P68-201ENST00000392293 1000 ntBASIC21.38■■□□□ 1.01
VCANP13611 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.38■■□□□ 1.01
VCANP13611 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VCANP13611 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.37■■□□□ 1.01
VCANP13611 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VCANP13611 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.37■■□□□ 1.01
VCANP13611 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
VCANP13611 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VCANP13611 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
VCANP13611 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
VCANP13611 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
VCANP13611 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
VCANP13611 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VCANP13611 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC21.37■■□□□ 1.01
VCANP13611 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC21.37■■□□□ 1.01
VCANP13611 KLK8-205ENST00000593490 267 ntTSL 3 BASIC21.37■■□□□ 1.01
VCANP13611 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VCANP13611 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VCANP13611 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
VCANP13611 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VCANP13611 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.36■■□□□ 1.01
VCANP13611 SAPCD2P2-201ENST00000431719 1174 ntBASIC21.36■■□□□ 1.01
VCANP13611 IRF5-214ENST00000613821 595 ntTSL 5 BASIC21.36■■□□□ 1.01
VCANP13611 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VCANP13611 HTR7P1-201ENST00000538670 1336 ntBASIC21.36■■□□□ 1.01
VCANP13611 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VCANP13611 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VCANP13611 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VCANP13611 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC21.36■■□□□ 1.01
VCANP13611 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
VCANP13611 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
VCANP13611 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
VCANP13611 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
VCANP13611 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.35■■□□□ 1.01
VCANP13611 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
VCANP13611 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
VCANP13611 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VCANP13611 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
VCANP13611 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VCANP13611 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VCANP13611 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.35■■□□□ 1.01
VCANP13611 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
VCANP13611 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VCANP13611 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.34■■□□□ 1.01
VCANP13611 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.34■■□□□ 1.01
VCANP13611 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.34■■□□□ 1.01
VCANP13611 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.34■■□□□ 1.01
VCANP13611 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
VCANP13611 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VCANP13611 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC21.33■■□□□ 1.01
VCANP13611 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
VCANP13611 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
VCANP13611 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.33■■□□□ 1.01
VCANP13611 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.33■■□□□ 1.01
VCANP13611 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VCANP13611 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.33■■□□□ 1.01
VCANP13611 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
VCANP13611 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VCANP13611 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.33■■□□□ 1
VCANP13611 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.33■■□□□ 1
VCANP13611 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.33■■□□□ 1
VCANP13611 CD320-202ENST00000537716 1119 ntTSL 2 BASIC21.33■■□□□ 1
VCANP13611 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VCANP13611 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC21.33■■□□□ 1
VCANP13611 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
VCANP13611 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.32■■□□□ 1
VCANP13611 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.32■■□□□ 1
VCANP13611 FAM86EP-206ENST00000510506 987 ntBASIC21.32■■□□□ 1
VCANP13611 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC21.32■■□□□ 1
VCANP13611 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.32■■□□□ 1
VCANP13611 AL034346.1-201ENST00000568244 1277 ntBASIC21.32■■□□□ 1
VCANP13611 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.32■■□□□ 1
VCANP13611 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VCANP13611 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
VCANP13611 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.32■■□□□ 1
VCANP13611 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.32■■□□□ 1
VCANP13611 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.31■■□□□ 1
VCANP13611 RN7SL510P-201ENST00000581311 263 ntBASIC21.31■■□□□ 1
VCANP13611 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VCANP13611 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VCANP13611 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.31■■□□□ 1
VCANP13611 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VCANP13611 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VCANP13611 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC21.31■■□□□ 1
VCANP13611 INGX-201ENST00000359239 846 ntBASIC21.31■■□□□ 1
VCANP13611 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC21.31■■□□□ 1
VCANP13611 CR769767.2-201ENST00000622735 460 ntBASIC21.31■■□□□ 1
VCANP13611 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.31■■□□□ 1
VCANP13611 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms