Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
TPM1P09493 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC22.53■■□□□ 1.2
TPM1P09493 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TPM1P09493 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TPM1P09493 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TPM1P09493 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
TPM1P09493 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
TPM1P09493 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
TPM1P09493 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC22.53■■□□□ 1.2
TPM1P09493 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC22.53■■□□□ 1.2
TPM1P09493 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TPM1P09493 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC22.53■■□□□ 1.2
TPM1P09493 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC22.53■■□□□ 1.2
TPM1P09493 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC22.53■■□□□ 1.2
TPM1P09493 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
TPM1P09493 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
TPM1P09493 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
TPM1P09493 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TPM1P09493 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC22.52■■□□□ 1.2
TPM1P09493 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC22.52■■□□□ 1.2
TPM1P09493 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
TPM1P09493 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC22.52■■□□□ 1.2
TPM1P09493 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
TPM1P09493 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TPM1P09493 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
TPM1P09493 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TPM1P09493 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC22.52■■□□□ 1.2
TPM1P09493 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
TPM1P09493 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC22.52■■□□□ 1.2
TPM1P09493 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
TPM1P09493 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
TPM1P09493 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TPM1P09493 AC011484.1-201ENST00000377652 1995 ntBASIC22.52■■□□□ 1.2
TPM1P09493 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC22.52■■□□□ 1.2
TPM1P09493 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
TPM1P09493 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC22.52■■□□□ 1.2
TPM1P09493 BX005040.4-201ENST00000637145 1518 ntBASIC22.52■■□□□ 1.19
TPM1P09493 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
TPM1P09493 HCG11-201ENST00000411553 5696 ntBASIC22.51■■□□□ 1.19
TPM1P09493 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC22.51■■□□□ 1.19
TPM1P09493 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
TPM1P09493 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC22.51■■□□□ 1.19
TPM1P09493 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
TPM1P09493 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
TPM1P09493 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TPM1P09493 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TPM1P09493 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TPM1P09493 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TPM1P09493 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC22.51■■□□□ 1.19
TPM1P09493 LHPP-203ENST00000392757 840 ntTSL 3 BASIC22.51■■□□□ 1.19
TPM1P09493 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC22.51■■□□□ 1.19
TPM1P09493 AC105233.4-201ENST00000642045 216 ntBASIC22.51■■□□□ 1.19
TPM1P09493 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC22.51■■□□□ 1.19
TPM1P09493 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TPM1P09493 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TPM1P09493 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TPM1P09493 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TPM1P09493 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
TPM1P09493 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TPM1P09493 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC22.5■■□□□ 1.19
TPM1P09493 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC22.5■■□□□ 1.19
TPM1P09493 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
TPM1P09493 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC22.5■■□□□ 1.19
TPM1P09493 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
TPM1P09493 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TPM1P09493 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC22.5■■□□□ 1.19
TPM1P09493 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
TPM1P09493 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TPM1P09493 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TPM1P09493 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
TPM1P09493 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
TPM1P09493 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TPM1P09493 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
TPM1P09493 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TPM1P09493 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TPM1P09493 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TPM1P09493 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC22.49■■□□□ 1.19
TPM1P09493 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TPM1P09493 EXOC3-AS1-202ENST00000623673 1663 ntBASIC22.49■■□□□ 1.19
TPM1P09493 AFG3L1P-217ENST00000557444 2447 ntBASIC22.49■■□□□ 1.19
TPM1P09493 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TPM1P09493 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
TPM1P09493 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
TPM1P09493 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
TPM1P09493 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
TPM1P09493 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TPM1P09493 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
TPM1P09493 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC22.49■■□□□ 1.19
TPM1P09493 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC22.49■■□□□ 1.19
TPM1P09493 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
TPM1P09493 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC22.49■■□□□ 1.19
TPM1P09493 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
TPM1P09493 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TPM1P09493 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC22.49■■□□□ 1.19
TPM1P09493 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TPM1P09493 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
TPM1P09493 AL512408.1-201ENST00000569378 2000 ntBASIC22.48■■□□□ 1.19
TPM1P09493 AP004607.4-201ENST00000530158 1459 ntBASIC22.48■■□□□ 1.19
TPM1P09493 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TPM1P09493 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC22.48■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms