Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.63■□□□□ 0.73
SEMA3DO95025 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.63■□□□□ 0.73
SEMA3DO95025 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
SEMA3DO95025 AC027702.1-201ENST00000563810 1770 ntBASIC19.62■□□□□ 0.73
SEMA3DO95025 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SEMA3DO95025 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.62■□□□□ 0.73
SEMA3DO95025 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
SEMA3DO95025 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SEMA3DO95025 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SEMA3DO95025 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.62■□□□□ 0.73
SEMA3DO95025 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.62■□□□□ 0.73
SEMA3DO95025 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
SEMA3DO95025 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
SEMA3DO95025 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SEMA3DO95025 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SEMA3DO95025 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.62■□□□□ 0.73
SEMA3DO95025 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SEMA3DO95025 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
SEMA3DO95025 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.62■□□□□ 0.73
SEMA3DO95025 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.62■□□□□ 0.73
SEMA3DO95025 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.62■□□□□ 0.73
SEMA3DO95025 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SEMA3DO95025 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SEMA3DO95025 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SEMA3DO95025 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SEMA3DO95025 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.61■□□□□ 0.73
SEMA3DO95025 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SEMA3DO95025 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SEMA3DO95025 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SEMA3DO95025 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
SEMA3DO95025 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.61■□□□□ 0.73
SEMA3DO95025 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.61■□□□□ 0.73
SEMA3DO95025 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.61■□□□□ 0.73
SEMA3DO95025 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.61■□□□□ 0.73
SEMA3DO95025 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
SEMA3DO95025 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SEMA3DO95025 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.61■□□□□ 0.73
SEMA3DO95025 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.61■□□□□ 0.73
SEMA3DO95025 AC137761.2-201ENST00000561729 223 ntBASIC19.61■□□□□ 0.73
SEMA3DO95025 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.61■□□□□ 0.73
SEMA3DO95025 AC145350.3-201ENST00000569033 163 ntBASIC19.61■□□□□ 0.73
SEMA3DO95025 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SEMA3DO95025 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SEMA3DO95025 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SEMA3DO95025 FEM1AP1-201ENST00000431297 1995 ntBASIC19.61■□□□□ 0.73
SEMA3DO95025 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.61■□□□□ 0.73
SEMA3DO95025 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SEMA3DO95025 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.6■□□□□ 0.73
SEMA3DO95025 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SEMA3DO95025 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SEMA3DO95025 AC007322.3-201ENST00000426526 701 ntBASIC19.6■□□□□ 0.73
SEMA3DO95025 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.6■□□□□ 0.73
SEMA3DO95025 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SEMA3DO95025 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SEMA3DO95025 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.6■□□□□ 0.73
SEMA3DO95025 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SEMA3DO95025 AC010536.3-201ENST00000620306 533 ntBASIC19.6■□□□□ 0.73
SEMA3DO95025 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.6■□□□□ 0.73
SEMA3DO95025 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SEMA3DO95025 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.6■□□□□ 0.73
SEMA3DO95025 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.6■□□□□ 0.73
SEMA3DO95025 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SEMA3DO95025 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SEMA3DO95025 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SEMA3DO95025 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SEMA3DO95025 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.6■□□□□ 0.73
SEMA3DO95025 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SEMA3DO95025 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SEMA3DO95025 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.59■□□□□ 0.73
SEMA3DO95025 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SEMA3DO95025 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SEMA3DO95025 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
SEMA3DO95025 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SEMA3DO95025 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SEMA3DO95025 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SEMA3DO95025 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SEMA3DO95025 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SEMA3DO95025 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.59■□□□□ 0.73
SEMA3DO95025 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.59■□□□□ 0.73
SEMA3DO95025 CDV3P1-201ENST00000471403 739 ntBASIC19.59■□□□□ 0.73
SEMA3DO95025 TERF1P5-201ENST00000477545 1207 ntBASIC19.59■□□□□ 0.73
SEMA3DO95025 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.59■□□□□ 0.73
SEMA3DO95025 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SEMA3DO95025 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SEMA3DO95025 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SEMA3DO95025 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SEMA3DO95025 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SEMA3DO95025 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
SEMA3DO95025 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
SEMA3DO95025 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SEMA3DO95025 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SEMA3DO95025 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.58■□□□□ 0.73
SEMA3DO95025 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SEMA3DO95025 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
SEMA3DO95025 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SEMA3DO95025 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SEMA3DO95025 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SEMA3DO95025 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SEMA3DO95025 AL162430.1-201ENST00000480705 870 ntBASIC19.58■□□□□ 0.72
SEMA3DO95025 AC007322.4-201ENST00000509611 723 ntBASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms