Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CFAP54Q96N23 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CFAP54Q96N23 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CFAP54Q96N23 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CFAP54Q96N23 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.36■□□□□ 0.85
CFAP54Q96N23 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.36■□□□□ 0.85
CFAP54Q96N23 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.36■□□□□ 0.85
CFAP54Q96N23 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.36■□□□□ 0.85
CFAP54Q96N23 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CFAP54Q96N23 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CFAP54Q96N23 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CFAP54Q96N23 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
CFAP54Q96N23 AP006587.3-201ENST00000525742 1516 ntBASIC20.36■□□□□ 0.85
CFAP54Q96N23 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.35■□□□□ 0.85
CFAP54Q96N23 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CFAP54Q96N23 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CFAP54Q96N23 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CFAP54Q96N23 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CFAP54Q96N23 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CFAP54Q96N23 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CFAP54Q96N23 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CFAP54Q96N23 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.35■□□□□ 0.85
CFAP54Q96N23 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CFAP54Q96N23 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
CFAP54Q96N23 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.35■□□□□ 0.85
CFAP54Q96N23 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CFAP54Q96N23 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CFAP54Q96N23 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CFAP54Q96N23 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CFAP54Q96N23 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CFAP54Q96N23 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
CFAP54Q96N23 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CFAP54Q96N23 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CFAP54Q96N23 AP000593.1-201ENST00000393668 712 ntBASIC20.35■□□□□ 0.85
CFAP54Q96N23 AC006538.3-201ENST00000612495 578 ntBASIC20.35■□□□□ 0.85
CFAP54Q96N23 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.35■□□□□ 0.85
CFAP54Q96N23 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.34■□□□□ 0.85
CFAP54Q96N23 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.34■□□□□ 0.85
CFAP54Q96N23 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CFAP54Q96N23 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CFAP54Q96N23 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.34■□□□□ 0.85
CFAP54Q96N23 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.34■□□□□ 0.85
CFAP54Q96N23 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.34■□□□□ 0.85
CFAP54Q96N23 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CFAP54Q96N23 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.34■□□□□ 0.85
CFAP54Q96N23 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CFAP54Q96N23 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.34■□□□□ 0.85
CFAP54Q96N23 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CFAP54Q96N23 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CFAP54Q96N23 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CFAP54Q96N23 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CFAP54Q96N23 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CFAP54Q96N23 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.34■□□□□ 0.85
CFAP54Q96N23 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.34■□□□□ 0.85
CFAP54Q96N23 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CFAP54Q96N23 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CFAP54Q96N23 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CFAP54Q96N23 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.34■□□□□ 0.85
CFAP54Q96N23 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.34■□□□□ 0.85
CFAP54Q96N23 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CFAP54Q96N23 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.33■□□□□ 0.85
CFAP54Q96N23 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CFAP54Q96N23 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CFAP54Q96N23 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CFAP54Q96N23 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.33■□□□□ 0.85
CFAP54Q96N23 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.33■□□□□ 0.85
CFAP54Q96N23 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.33■□□□□ 0.85
CFAP54Q96N23 AC120498.10-201ENST00000621827 505 ntBASIC20.33■□□□□ 0.85
CFAP54Q96N23 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CFAP54Q96N23 UNC93B2-201ENST00000285383 730 ntBASIC20.33■□□□□ 0.84
CFAP54Q96N23 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
CFAP54Q96N23 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.33■□□□□ 0.84
CFAP54Q96N23 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.33■□□□□ 0.84
CFAP54Q96N23 AP000550.4-202ENST00000639755 178 ntBASIC20.33■□□□□ 0.84
CFAP54Q96N23 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.33■□□□□ 0.84
CFAP54Q96N23 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CFAP54Q96N23 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CFAP54Q96N23 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.33■□□□□ 0.84
CFAP54Q96N23 AL355355.2-201ENST00000442321 338 ntBASIC20.33■□□□□ 0.84
CFAP54Q96N23 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC20.33■□□□□ 0.84
CFAP54Q96N23 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CFAP54Q96N23 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CFAP54Q96N23 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.32■□□□□ 0.84
CFAP54Q96N23 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CFAP54Q96N23 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.32■□□□□ 0.84
CFAP54Q96N23 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.32■□□□□ 0.84
CFAP54Q96N23 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CFAP54Q96N23 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CFAP54Q96N23 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CFAP54Q96N23 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CFAP54Q96N23 IPPK-202ENST00000375522 882 ntTSL 3 BASIC20.32■□□□□ 0.84
CFAP54Q96N23 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.32■□□□□ 0.84
CFAP54Q96N23 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.32■□□□□ 0.84
CFAP54Q96N23 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CFAP54Q96N23 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.31■□□□□ 0.84
CFAP54Q96N23 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.31■□□□□ 0.84
CFAP54Q96N23 KRASP1-201ENST00000407852 552 ntBASIC20.31■□□□□ 0.84
CFAP54Q96N23 AP000525.1-201ENST00000608286 694 ntBASIC20.31■□□□□ 0.84
CFAP54Q96N23 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.31■□□□□ 0.84
CFAP54Q96N23 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms