Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC15.42■□□□□ 0.06
FOXA3P55318 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA3P55318 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA3P55318 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC15.42■□□□□ 0.06
FOXA3P55318 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC15.42■□□□□ 0.06
FOXA3P55318 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC15.42■□□□□ 0.06
FOXA3P55318 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA3P55318 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC15.42■□□□□ 0.06
FOXA3P55318 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
FOXA3P55318 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA3P55318 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC15.42■□□□□ 0.06
FOXA3P55318 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
FOXA3P55318 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
FOXA3P55318 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
FOXA3P55318 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
FOXA3P55318 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC15.42■□□□□ 0.06
FOXA3P55318 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA3P55318 AC090340.1-201ENST00000620778 4980 ntBASIC15.42■□□□□ 0.06
FOXA3P55318 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA3P55318 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA3P55318 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC15.41■□□□□ 0.06
FOXA3P55318 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA3P55318 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA3P55318 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA3P55318 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
FOXA3P55318 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA3P55318 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC15.41■□□□□ 0.06
FOXA3P55318 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA3P55318 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA3P55318 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
FOXA3P55318 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA3P55318 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA3P55318 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA3P55318 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
FOXA3P55318 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA3P55318 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC15.4■□□□□ 0.06
FOXA3P55318 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
FOXA3P55318 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA3P55318 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA3P55318 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC15.4■□□□□ 0.06
FOXA3P55318 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC15.4■□□□□ 0.06
FOXA3P55318 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC15.4■□□□□ 0.06
FOXA3P55318 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA3P55318 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
FOXA3P55318 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA3P55318 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA3P55318 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC15.4■□□□□ 0.06
FOXA3P55318 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC15.4■□□□□ 0.06
FOXA3P55318 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
FOXA3P55318 TSPY13P-201ENST00000338964 914 ntBASIC15.4■□□□□ 0.06
FOXA3P55318 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC15.4■□□□□ 0.06
FOXA3P55318 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
FOXA3P55318 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
FOXA3P55318 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA3P55318 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC15.4■□□□□ 0.06
FOXA3P55318 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
FOXA3P55318 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA3P55318 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA3P55318 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA3P55318 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA3P55318 AP004607.7-201ENST00000527152 1677 ntBASIC15.4■□□□□ 0.06
FOXA3P55318 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA3P55318 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA3P55318 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA3P55318 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA3P55318 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA3P55318 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
FOXA3P55318 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA3P55318 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA3P55318 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA3P55318 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA3P55318 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA3P55318 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC15.39■□□□□ 0.05
FOXA3P55318 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC15.39■□□□□ 0.05
FOXA3P55318 ABHD17AP5-201ENST00000580133 923 ntBASIC15.39■□□□□ 0.05
FOXA3P55318 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC15.39■□□□□ 0.05
FOXA3P55318 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA3P55318 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC15.39■□□□□ 0.05
FOXA3P55318 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC15.39■□□□□ 0.05
FOXA3P55318 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA3P55318 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
FOXA3P55318 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA3P55318 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
FOXA3P55318 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA3P55318 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC15.38■□□□□ 0.05
FOXA3P55318 AC116562.4-201ENST00000641316 2276 ntBASIC15.38■□□□□ 0.05
FOXA3P55318 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
FOXA3P55318 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA3P55318 GATM-206ENST00000558336 1522 ntTSL 2 BASIC15.38■□□□□ 0.05
FOXA3P55318 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC15.38■□□□□ 0.05
FOXA3P55318 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA3P55318 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC15.38■□□□□ 0.05
FOXA3P55318 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA3P55318 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA3P55318 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA3P55318 GUK1-208ENST00000366728 842 ntTSL 2 BASIC15.38■□□□□ 0.05
FOXA3P55318 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA3P55318 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC15.38■□□□□ 0.05
FOXA3P55318 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA3P55318 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms