Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VIMP08670 KRT8P33-201ENST00000508125 1423 ntBASIC20.62■□□□□ 0.89
VIMP08670 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
VIMP08670 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.62■□□□□ 0.89
VIMP08670 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
VIMP08670 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VIMP08670 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
VIMP08670 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VIMP08670 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VIMP08670 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.62■□□□□ 0.89
VIMP08670 pRNA.6-201ENST00000610482 90 ntBASIC20.62■□□□□ 0.89
VIMP08670 pRNA.5-201ENST00000612139 90 ntBASIC20.62■□□□□ 0.89
VIMP08670 pRNA.11-201ENST00000618423 90 ntBASIC20.62■□□□□ 0.89
VIMP08670 pRNA.13-201ENST00000619112 90 ntBASIC20.62■□□□□ 0.89
VIMP08670 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
VIMP08670 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.62■□□□□ 0.89
VIMP08670 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VIMP08670 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VIMP08670 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
VIMP08670 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
VIMP08670 AP000974.1-201ENST00000623909 2387 ntBASIC20.61■□□□□ 0.89
VIMP08670 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.61■□□□□ 0.89
VIMP08670 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.61■□□□□ 0.89
VIMP08670 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
VIMP08670 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VIMP08670 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VIMP08670 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VIMP08670 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VIMP08670 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.61■□□□□ 0.89
VIMP08670 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VIMP08670 AC241377.3-202ENST00000626088 1088 ntBASIC20.61■□□□□ 0.89
VIMP08670 AC241585.3-202ENST00000628937 1088 ntBASIC20.61■□□□□ 0.89
VIMP08670 AC245100.8-202ENST00000629247 1058 ntBASIC20.61■□□□□ 0.89
VIMP08670 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
VIMP08670 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.61■□□□□ 0.89
VIMP08670 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VIMP08670 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VIMP08670 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VIMP08670 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VIMP08670 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VIMP08670 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VIMP08670 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VIMP08670 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VIMP08670 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VIMP08670 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VIMP08670 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.6■□□□□ 0.89
VIMP08670 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VIMP08670 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.6■□□□□ 0.89
VIMP08670 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VIMP08670 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.6■□□□□ 0.89
VIMP08670 BX664725.1-201ENST00000438252 379 ntBASIC20.6■□□□□ 0.89
VIMP08670 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VIMP08670 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VIMP08670 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VIMP08670 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VIMP08670 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.6■□□□□ 0.89
VIMP08670 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.6■□□□□ 0.89
VIMP08670 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VIMP08670 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.6■□□□□ 0.89
VIMP08670 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VIMP08670 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VIMP08670 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
VIMP08670 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.59■□□□□ 0.89
VIMP08670 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VIMP08670 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.59■□□□□ 0.89
VIMP08670 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VIMP08670 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VIMP08670 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VIMP08670 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
VIMP08670 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
VIMP08670 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VIMP08670 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.59■□□□□ 0.89
VIMP08670 TCF3P1-201ENST00000423021 1937 ntBASIC20.59■□□□□ 0.89
VIMP08670 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.59■□□□□ 0.89
VIMP08670 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
VIMP08670 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.58■□□□□ 0.89
VIMP08670 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VIMP08670 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.58■□□□□ 0.89
VIMP08670 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.58■□□□□ 0.89
VIMP08670 MTDHP2-201ENST00000601468 714 ntBASIC20.58■□□□□ 0.89
VIMP08670 AL031848.2-201ENST00000607670 837 ntBASIC20.58■□□□□ 0.89
VIMP08670 AC092028.1-203ENST00000608262 953 ntBASIC20.58■□□□□ 0.89
VIMP08670 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
VIMP08670 AC004408.2-201ENST00000623613 2777 ntBASIC20.58■□□□□ 0.88
VIMP08670 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
VIMP08670 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.58■□□□□ 0.88
VIMP08670 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
VIMP08670 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.88
VIMP08670 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VIMP08670 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.88
VIMP08670 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VIMP08670 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.57■□□□□ 0.88
VIMP08670 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VIMP08670 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.57■□□□□ 0.88
VIMP08670 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
VIMP08670 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VIMP08670 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VIMP08670 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VIMP08670 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.57■□□□□ 0.88
VIMP08670 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms