Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
USH2AO75445 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
USH2AO75445 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
USH2AO75445 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC9.29□□□□□ -0.92
USH2AO75445 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC9.29□□□□□ -0.92
USH2AO75445 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC9.29□□□□□ -0.92
USH2AO75445 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC9.29□□□□□ -0.92
USH2AO75445 CD81-212ENST00000526072 1172 ntTSL 5 BASIC9.29□□□□□ -0.92
USH2AO75445 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
USH2AO75445 AC010203.1-204ENST00000548782 407 ntBASIC9.29□□□□□ -0.92
USH2AO75445 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
USH2AO75445 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
USH2AO75445 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
USH2AO75445 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
USH2AO75445 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
USH2AO75445 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
USH2AO75445 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC9.29□□□□□ -0.92
USH2AO75445 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC9.29□□□□□ -0.92
USH2AO75445 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC9.29□□□□□ -0.92
USH2AO75445 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC9.29□□□□□ -0.92
USH2AO75445 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
USH2AO75445 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
USH2AO75445 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC9.29□□□□□ -0.92
USH2AO75445 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
USH2AO75445 AC138932.3-201ENST00000567634 1902 ntBASIC9.29□□□□□ -0.92
USH2AO75445 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC9.29□□□□□ -0.92
USH2AO75445 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC9.29□□□□□ -0.92
USH2AO75445 CALM1-205ENST00000553542 877 ntTSL 5 BASIC9.29□□□□□ -0.92
USH2AO75445 AC093458.2-201ENST00000623150 629 ntBASIC9.29□□□□□ -0.92
USH2AO75445 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
USH2AO75445 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
USH2AO75445 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
USH2AO75445 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
USH2AO75445 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC9.28□□□□□ -0.92
USH2AO75445 AL845331.1-201ENST00000424978 1190 ntBASIC9.28□□□□□ -0.92
USH2AO75445 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC9.28□□□□□ -0.92
USH2AO75445 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC9.28□□□□□ -0.92
USH2AO75445 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC9.28□□□□□ -0.92
USH2AO75445 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC9.28□□□□□ -0.92
USH2AO75445 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC9.28□□□□□ -0.92
USH2AO75445 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC9.28□□□□□ -0.92
USH2AO75445 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 AC124283.5-201ENST00000624661 1809 ntBASIC9.28□□□□□ -0.92
USH2AO75445 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 AC022616.7-201ENST00000525383 220 ntBASIC9.28□□□□□ -0.92
USH2AO75445 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC9.28□□□□□ -0.92
USH2AO75445 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC9.28□□□□□ -0.92
USH2AO75445 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC9.28□□□□□ -0.92
USH2AO75445 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC9.28□□□□□ -0.92
USH2AO75445 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC9.28□□□□□ -0.92
USH2AO75445 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC9.28□□□□□ -0.92
USH2AO75445 KRT18P68-201ENST00000392293 1000 ntBASIC9.28□□□□□ -0.92
USH2AO75445 NUDT16P1-203ENST00000513809 620 ntBASIC9.28□□□□□ -0.92
USH2AO75445 KLK8-205ENST00000593490 267 ntTSL 3 BASIC9.28□□□□□ -0.92
USH2AO75445 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC9.28□□□□□ -0.92
USH2AO75445 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
USH2AO75445 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC9.27□□□□□ -0.92
USH2AO75445 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC9.27□□□□□ -0.92
USH2AO75445 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC9.27□□□□□ -0.92
USH2AO75445 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC9.27□□□□□ -0.92
USH2AO75445 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC9.27□□□□□ -0.92
USH2AO75445 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC9.27□□□□□ -0.93
USH2AO75445 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC9.27□□□□□ -0.93
USH2AO75445 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
USH2AO75445 AC110285.5-201ENST00000611501 352 ntBASIC9.27□□□□□ -0.93
USH2AO75445 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
USH2AO75445 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
USH2AO75445 AP000550.4-202ENST00000639755 178 ntBASIC9.27□□□□□ -0.93
USH2AO75445 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC9.27□□□□□ -0.93
USH2AO75445 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC9.27□□□□□ -0.93
USH2AO75445 RARG-204ENST00000543726 1779 ntTSL 2 BASIC9.27□□□□□ -0.93
USH2AO75445 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
USH2AO75445 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC9.27□□□□□ -0.93
USH2AO75445 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
USH2AO75445 AC120498.8-201ENST00000614275 531 ntBASIC9.27□□□□□ -0.93
USH2AO75445 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC9.27□□□□□ -0.93
USH2AO75445 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC9.27□□□□□ -0.93
USH2AO75445 KRT8P10-201ENST00000450021 1447 ntBASIC9.27□□□□□ -0.93
USH2AO75445 AP000593.1-201ENST00000393668 712 ntBASIC9.27□□□□□ -0.93
USH2AO75445 AC063952.2-201ENST00000498792 1227 ntBASIC9.27□□□□□ -0.93
USH2AO75445 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC9.27□□□□□ -0.93
USH2AO75445 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC9.27□□□□□ -0.93
USH2AO75445 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC9.27□□□□□ -0.93
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms