Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
SHOX2O60902 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHOX2O60902 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHOX2O60902 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.66■□□□□ 0.9
SHOX2O60902 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHOX2O60902 MIR6722-201ENST00000617286 78 ntBASIC20.66■□□□□ 0.9
SHOX2O60902 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.66■□□□□ 0.9
SHOX2O60902 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.66■□□□□ 0.9
SHOX2O60902 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SHOX2O60902 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SHOX2O60902 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.66■□□□□ 0.9
SHOX2O60902 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
SHOX2O60902 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHOX2O60902 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
SHOX2O60902 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
SHOX2O60902 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.65■□□□□ 0.9
SHOX2O60902 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
SHOX2O60902 AL138781.2-201ENST00000617896 1843 ntBASIC20.65■□□□□ 0.9
SHOX2O60902 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.65■□□□□ 0.9
SHOX2O60902 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.65■□□□□ 0.9
SHOX2O60902 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHOX2O60902 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHOX2O60902 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHOX2O60902 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.65■□□□□ 0.9
SHOX2O60902 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SHOX2O60902 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.64■□□□□ 0.9
SHOX2O60902 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SHOX2O60902 KRT8P33-201ENST00000508125 1423 ntBASIC20.64■□□□□ 0.89
SHOX2O60902 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHOX2O60902 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHOX2O60902 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.64■□□□□ 0.89
SHOX2O60902 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.64■□□□□ 0.89
SHOX2O60902 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.64■□□□□ 0.89
SHOX2O60902 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHOX2O60902 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
SHOX2O60902 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHOX2O60902 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.64■□□□□ 0.89
SHOX2O60902 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.64■□□□□ 0.89
SHOX2O60902 Z82202.1-201ENST00000623446 1880 ntBASIC20.64■□□□□ 0.89
SHOX2O60902 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
SHOX2O60902 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHOX2O60902 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHOX2O60902 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHOX2O60902 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHOX2O60902 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHOX2O60902 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHOX2O60902 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHOX2O60902 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.63■□□□□ 0.89
SHOX2O60902 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
SHOX2O60902 AC005332.8-201ENST00000622750 2735 ntBASIC20.63■□□□□ 0.89
SHOX2O60902 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.63■□□□□ 0.89
SHOX2O60902 AC092720.2-201ENST00000602388 1665 ntBASIC20.63■□□□□ 0.89
SHOX2O60902 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
SHOX2O60902 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHOX2O60902 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.63■□□□□ 0.89
SHOX2O60902 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
SHOX2O60902 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.62■□□□□ 0.89
SHOX2O60902 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.62■□□□□ 0.89
SHOX2O60902 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SHOX2O60902 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHOX2O60902 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHOX2O60902 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHOX2O60902 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHOX2O60902 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
SHOX2O60902 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHOX2O60902 AL033527.3-201ENST00000566366 1196 ntBASIC20.62■□□□□ 0.89
SHOX2O60902 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHOX2O60902 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHOX2O60902 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHOX2O60902 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHOX2O60902 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SHOX2O60902 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
SHOX2O60902 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHOX2O60902 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.61■□□□□ 0.89
SHOX2O60902 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHOX2O60902 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHOX2O60902 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.61■□□□□ 0.89
SHOX2O60902 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHOX2O60902 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHOX2O60902 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.61■□□□□ 0.89
SHOX2O60902 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHOX2O60902 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
SHOX2O60902 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHOX2O60902 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHOX2O60902 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.61■□□□□ 0.89
SHOX2O60902 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHOX2O60902 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHOX2O60902 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHOX2O60902 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHOX2O60902 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC20.6■□□□□ 0.89
SHOX2O60902 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHOX2O60902 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.6■□□□□ 0.89
SHOX2O60902 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHOX2O60902 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHOX2O60902 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
SHOX2O60902 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SHOX2O60902 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.6■□□□□ 0.89
SHOX2O60902 AC103834.1-201ENST00000520383 144 ntBASIC20.6■□□□□ 0.89
SHOX2O60902 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.6■□□□□ 0.89
SHOX2O60902 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms