Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 OR2A1-AS1-201ENST00000462305 773 ntBASIC6.32□□□□□ -1.4
SYNE1Q8NF91 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 KRT18P20-201ENST00000548986 1279 ntBASIC6.32□□□□□ -1.4
SYNE1Q8NF91 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 GCK-205ENST00000437084 1385 ntTSL 5 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 AC013268.1-206ENST00000638368 961 ntBASIC6.32□□□□□ -1.4
SYNE1Q8NF91 AC112229.1-201ENST00000639295 961 ntBASIC6.32□□□□□ -1.4
SYNE1Q8NF91 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 CD44-222ENST00000526025 1052 ntTSL 2 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 STK24-203ENST00000397517 4578 ntTSL 2 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC6.32□□□□□ -1.4
SYNE1Q8NF91 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 ADM-205ENST00000528544 586 ntTSL 2 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 AL137060.1-201ENST00000618151 2648 ntBASIC6.31□□□□□ -1.4
SYNE1Q8NF91 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms