Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.761e-6■■■□□ 17.3
YBX3P16989 CEP192-212ENST00000540847 2485 ntTSL 212.68□□□□□ -0.382e-6■■■□□ 17.3
YBX3P16989 CEP192-202ENST00000430049 3286 ntTSL 1 (best) BASIC9.2□□□□□ -0.942e-6■■■□□ 17.3
YBX3P16989 CEP192-215ENST00000589993 3284 ntTSL 58.98□□□□□ -0.972e-6■■■□□ 17.3
YBX3P16989 CEP192-207ENST00000508539 451 ntTSL 58.96□□□□□ -0.982e-6■■■□□ 17.3
YBX3P16989 CEP192-208ENST00000510237 6548 ntTSL 1 (best)8.68□□□□□ -1.022e-6■■■□□ 17.3
YBX3P16989 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.353e-7■■■□□ 17.3
YBX3P16989 VPS54-203ENST00000409558 4337 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.183e-7■■■□□ 17.3
YBX3P16989 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.61□□□□□ -1.993e-7■■■□□ 17.3
YBX3P16989 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.354e-7■■■□□ 17.3
YBX3P16989 ALKBH3-210ENST00000532962 1371 ntTSL 1 (best)20.98■□□□□ 0.954e-7■■■□□ 17.3
YBX3P16989 ALKBH3-207ENST00000530803 1557 ntTSL 218.04■□□□□ 0.484e-7■■■□□ 17.3
YBX3P16989 EEF1B2-211ENST00000482103 587 ntTSL 27.58□□□□□ -1.29e-16■■■□□ 17.3
YBX3P16989 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.028e-7■■■□□ 17.3
YBX3P16989 SAP30BP-210ENST00000579864 868 ntTSL 311.11□□□□□ -0.634e-10■■■□□ 17.3
YBX3P16989 UBE3A-222ENST00000630907 889 ntTSL 532.59■■■□□ 2.812e-8■■■□□ 17.3
YBX3P16989 UBE3A-213ENST00000626793 733 ntTSL 531.88■■■□□ 2.692e-8■■■□□ 17.3
YBX3P16989 UBE3A-219ENST00000629886 436 ntTSL 37.66□□□□□ -1.182e-8■■■□□ 17.3
YBX3P16989 UBE3A-216ENST00000628733 706 ntTSL 55.78□□□□□ -1.482e-8■■■□□ 17.3
YBX3P16989 QARS-208ENST00000459870 1317 ntTSL 518.46■□□□□ 0.554e-12■■■□□ 17.2
YBX3P16989 QARS-211ENST00000470113 954 ntTSL 516.04■□□□□ 0.164e-12■■■□□ 17.2
YBX3P16989 QARS-207ENST00000453392 859 ntTSL 512.82□□□□□ -0.364e-12■■■□□ 17.2
YBX3P16989 MRPL3-205ENST00000507669 848 ntTSL 319.74■□□□□ 0.751e-9■■■□□ 17.2
YBX3P16989 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.832e-8■■■□□ 17.2
YBX3P16989 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC23.78■■□□□ 1.42e-8■■■□□ 17.2
YBX3P16989 MAP2K2-210ENST00000601786 1778 ntTSL 221.16■□□□□ 0.982e-8■■■□□ 17.2
YBX3P16989 MAP2K2-209ENST00000600584 2926 ntTSL 215.2■□□□□ 0.022e-8■■■□□ 17.2
YBX3P16989 MAP2K2-206ENST00000597263 552 ntTSL 312.43□□□□□ -0.422e-8■■■□□ 17.2
YBX3P16989 SNU13-207ENST00000469522 640 ntTSL 215.73■□□□□ 0.118e-10■■■□□ 17.2
YBX3P16989 UGGT1-202ENST00000376723 6682 ntTSL 1 (best)15.84■□□□□ 0.132e-6■■■□□ 17.2
YBX3P16989 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.431e-7■■■□□ 17.2
YBX3P16989 MAF1-203ENST00000527572 737 ntTSL 319.6■□□□□ 0.735e-7■■■□□ 17.2
YBX3P16989 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC27.33■■□□□ 1.973e-8■■■□□ 17.2
YBX3P16989 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC25.86■■□□□ 1.733e-8■■■□□ 17.2
YBX3P16989 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC23.43■■□□□ 1.343e-8■■■□□ 17.2
YBX3P16989 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.243e-8■■■□□ 17.2
YBX3P16989 NCOR2-224ENST00000542927 828 ntTSL 317.92■□□□□ 0.462e-8■■■□□ 17.2
YBX3P16989 NCOR2-212ENST00000448008 735 ntTSL 517.75■□□□□ 0.432e-8■■■□□ 17.2
YBX3P16989 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.839e-7■■■□□ 17.2
YBX3P16989 MAP7D1-202ENST00000373148 1797 ntTSL 233.49■■■□□ 2.956e-7■■■□□ 17.2
YBX3P16989 MAP7D1-213ENST00000532131 771 ntTSL 533.23■■■□□ 2.916e-7■■■□□ 17.2
YBX3P16989 MAP7D1-212ENST00000530975 744 ntTSL 529.16■■■□□ 2.266e-7■■■□□ 17.2
YBX3P16989 MAP7D1-209ENST00000487131 733 ntTSL 523.83■■□□□ 1.416e-7■■■□□ 17.2
YBX3P16989 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.96e-7■■■□□ 17.2
YBX3P16989 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.236e-7■■■□□ 17.2
YBX3P16989 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.216e-7■■■□□ 17.2
YBX3P16989 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.366e-8■■■□□ 17.2
YBX3P16989 LRRC59-202ENST00000503118 438 ntTSL 59.57□□□□□ -0.889e-11■■■□□ 17.2
YBX3P16989 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.792e-7■■■□□ 17.2
YBX3P16989 CCDC6-202ENST00000491922 2642 ntTSL 26.59□□□□□ -1.351e-8■■■□□ 17.2
YBX3P16989 GAL-202ENST00000538401 646 ntTSL 327.83■■■□□ 2.054e-7■■■□□ 17.2
YBX3P16989 RPL12P16-201ENST00000431098 498 ntBASIC8.79□□□□□ -11e-19■■■□□ 17.2
YBX3P16989 NBEAL1-204ENST00000460355 3595 ntTSL 26.17□□□□□ -1.421e-19■■■□□ 17.2
YBX3P16989 NBEAL1-201ENST00000414576 2240 ntTSL 55.89□□□□□ -1.471e-19■■■□□ 17.2
YBX3P16989 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.831e-19■■■□□ 17.2
YBX3P16989 WDR18-203ENST00000586317 831 ntTSL 226.87■■□□□ 1.891e-6■■■□□ 17.2
YBX3P16989 WDR18-206ENST00000590397 1083 ntTSL 523.97■■□□□ 1.431e-6■■■□□ 17.2
YBX3P16989 DIAPH1-211ENST00000518047 4668 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.644e-8■■■□□ 17.2
YBX3P16989 UCP2-210ENST00000545562 344 ntTSL 216.11■□□□□ 0.175e-9■■■□□ 17.2
YBX3P16989 SH3BP4-204ENST00000416021 593 ntTSL 327.48■■□□□ 1.997e-6■■■□□ 17.2
YBX3P16989 PRRC2A-204ENST00000462617 1015 ntTSL 521.58■■□□□ 1.058e-11■■■□□ 17.2
YBX3P16989 ESYT1-206ENST00000550515 716 ntTSL 219.25■□□□□ 0.671e-6■■■□□ 17.2
YBX3P16989 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.586e-11■■■□□ 17.2
YBX3P16989 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.427e-6■■■□□ 17.2
YBX3P16989 PRRC2A-209ENST00000482441 719 ntTSL 215.76■□□□□ 0.113e-12■■■□□ 17.2
YBX3P16989 PRRC2A-214ENST00000492691 1118 ntTSL 215.38■□□□□ 0.058e-11■■■□□ 17.2
YBX3P16989 ESYT1-202ENST00000394048 4388 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.341e-6■■■□□ 17.2
YBX3P16989 KLB-201ENST00000257408 6082 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.377e-6■■■□□ 17.2
YBX3P16989 PRRC2A-202ENST00000376033 6893 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.396e-11■■■□□ 17.2
YBX3P16989 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.557e-6■■■□□ 17.2
YBX3P16989 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.72e-6■■■□□ 17.2
YBX3P16989 IMMT-210ENST00000486633 631 ntTSL 216.8■□□□□ 0.287e-15■■■□□ 17.2
YBX3P16989 CBL-202ENST00000634301 340 ntTSL 310.16□□□□□ -0.785e-7■■■□□ 17.2
YBX3P16989 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC8.85□□□□□ -0.998e-7■■■□□ 17.1
YBX3P16989 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.05□□□□□ -1.68e-7■■■□□ 17.1
YBX3P16989 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.67□□□□□ -1.668e-7■■■□□ 17.1
YBX3P16989 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC8.62□□□□□ -1.035e-10■■■□□ 17.1
YBX3P16989 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.875e-10■■■□□ 17.1
YBX3P16989 CWF19L1-204ENST00000468709 2402 ntTSL 211.37□□□□□ -0.594e-6■■■□□ 17.1
YBX3P16989 CWF19L1-206ENST00000478047 2694 ntTSL 210.97□□□□□ -0.654e-6■■■□□ 17.1
YBX3P16989 CWF19L1-201ENST00000354105 1815 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.064e-6■■■□□ 17.1
YBX3P16989 CWF19L1-207ENST00000482452 1606 ntTSL 58.03□□□□□ -1.124e-6■■■□□ 17.1
YBX3P16989 ATIC-204ENST00000427397 1046 ntTSL 524.67■■□□□ 1.541e-6■■■□□ 17.1
YBX3P16989 RPS2-207ENST00000527826 837 ntTSL 1 (best)35.26■■■■□ 3.243e-62■■■□□ 17.1
YBX3P16989 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.564e-12■■■□□ 17.1
YBX3P16989 S100A11-202ENST00000478109 557 ntTSL 34.97□□□□□ -1.614e-12■■■□□ 17.1
YBX3P16989 ERP44-201ENST00000262455 4854 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.341e-8■■■□□ 17.1
YBX3P16989 SNU13-208ENST00000488571 556 ntTSL 515.91■□□□□ 0.148e-13■■■□□ 17.1
YBX3P16989 CLIC2-201ENST00000321926 629 ntTSL 35.36□□□□□ -1.551e-6■■■□□ 17.1
YBX3P16989 EIF3L-208ENST00000451427 583 ntTSL 46.86□□□□□ -1.311e-10■■■□□ 17.1
YBX3P16989 RHEB-207ENST00000496004 744 ntTSL 2 BASIC18.12■□□□□ 0.497e-9■■■□□ 17.1
YBX3P16989 PARP1-207ENST00000490921 3165 ntTSL 29.41□□□□□ -0.97e-10■■■□□ 17.1
YBX3P16989 BCOR-209ENST00000427012 1969 ntTSL 59.57□□□□□ -0.882e-7■■■□□ 17.1
YBX3P16989 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.052e-6■■■□□ 17.1
YBX3P16989 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.72□□□□□ -1.812e-6■■■□□ 17.1
YBX3P16989 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.376e-8■■■□□ 17.1
YBX3P16989 PANK4-202ENST00000435556 2524 ntTSL 217.17■□□□□ 0.346e-8■■■□□ 17.1
YBX3P16989 RPL23-210ENST00000584583 429 ntTSL 210.89□□□□□ -0.672e-43■■■□□ 17.1
YBX3P16989 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.523e-10■■■□□ 17.1
YBX3P16989 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.858e-7■■■□□ 17.1
Retrieved 100 of 29,075 protein–RNA pairs in 474.1 ms