Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC26.18■■□□□ 1.78
CACNA1FO60840 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC26.18■■□□□ 1.78
CACNA1FO60840 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CACNA1FO60840 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CACNA1FO60840 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC26.18■■□□□ 1.78
CACNA1FO60840 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC26.17■■□□□ 1.78
CACNA1FO60840 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
CACNA1FO60840 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
CACNA1FO60840 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
CACNA1FO60840 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC26.17■■□□□ 1.78
CACNA1FO60840 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CACNA1FO60840 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC26.16■■□□□ 1.78
CACNA1FO60840 AC006128.1-201ENST00000624704 1661 ntBASIC26.16■■□□□ 1.78
CACNA1FO60840 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC26.16■■□□□ 1.78
CACNA1FO60840 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC26.16■■□□□ 1.78
CACNA1FO60840 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CACNA1FO60840 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC26.16■■□□□ 1.78
CACNA1FO60840 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC26.16■■□□□ 1.78
CACNA1FO60840 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CACNA1FO60840 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CACNA1FO60840 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CACNA1FO60840 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC26.15■■□□□ 1.78
CACNA1FO60840 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC26.15■■□□□ 1.78
CACNA1FO60840 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC26.15■■□□□ 1.78
CACNA1FO60840 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CACNA1FO60840 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC26.15■■□□□ 1.78
CACNA1FO60840 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
CACNA1FO60840 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC26.15■■□□□ 1.78
CACNA1FO60840 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC26.15■■□□□ 1.78
CACNA1FO60840 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC26.15■■□□□ 1.78
CACNA1FO60840 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
CACNA1FO60840 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC26.15■■□□□ 1.78
CACNA1FO60840 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CACNA1FO60840 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CACNA1FO60840 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CACNA1FO60840 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
CACNA1FO60840 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CACNA1FO60840 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CACNA1FO60840 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC26.14■■□□□ 1.78
CACNA1FO60840 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.77
CACNA1FO60840 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC26.14■■□□□ 1.77
CACNA1FO60840 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
CACNA1FO60840 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
CACNA1FO60840 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.77
CACNA1FO60840 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
CACNA1FO60840 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC26.14■■□□□ 1.77
CACNA1FO60840 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
CACNA1FO60840 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
CACNA1FO60840 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
CACNA1FO60840 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
CACNA1FO60840 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC26.13■■□□□ 1.77
CACNA1FO60840 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC26.13■■□□□ 1.77
CACNA1FO60840 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC26.13■■□□□ 1.77
CACNA1FO60840 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
CACNA1FO60840 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CACNA1FO60840 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CACNA1FO60840 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CACNA1FO60840 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CACNA1FO60840 MIPEPP3-201ENST00000412105 444 ntBASIC26.12■■□□□ 1.77
CACNA1FO60840 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC26.12■■□□□ 1.77
CACNA1FO60840 MIR4758-201ENST00000577688 71 ntBASIC26.12■■□□□ 1.77
CACNA1FO60840 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC26.12■■□□□ 1.77
CACNA1FO60840 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CACNA1FO60840 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
CACNA1FO60840 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
CACNA1FO60840 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC26.11■■□□□ 1.77
CACNA1FO60840 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC26.11■■□□□ 1.77
CACNA1FO60840 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC26.11■■□□□ 1.77
CACNA1FO60840 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
CACNA1FO60840 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CACNA1FO60840 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
CACNA1FO60840 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
CACNA1FO60840 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
CACNA1FO60840 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CACNA1FO60840 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC26.11■■□□□ 1.77
CACNA1FO60840 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
CACNA1FO60840 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC26.11■■□□□ 1.77
CACNA1FO60840 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC26.11■■□□□ 1.77
CACNA1FO60840 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC26.11■■□□□ 1.77
CACNA1FO60840 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC26.11■■□□□ 1.77
CACNA1FO60840 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC26.11■■□□□ 1.77
CACNA1FO60840 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
CACNA1FO60840 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
CACNA1FO60840 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC26.1■■□□□ 1.77
CACNA1FO60840 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
CACNA1FO60840 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC26.1■■□□□ 1.77
CACNA1FO60840 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
CACNA1FO60840 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC26.1■■□□□ 1.77
CACNA1FO60840 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC26.1■■□□□ 1.77
CACNA1FO60840 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC26.1■■□□□ 1.77
CACNA1FO60840 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC26.1■■□□□ 1.77
CACNA1FO60840 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
CACNA1FO60840 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
CACNA1FO60840 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC26.1■■□□□ 1.77
CACNA1FO60840 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC26.1■■□□□ 1.77
CACNA1FO60840 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC26.1■■□□□ 1.77
CACNA1FO60840 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC26.1■■□□□ 1.77
CACNA1FO60840 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
CACNA1FO60840 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CACNA1FO60840 STAC-204ENST00000457375 1366 ntTSL 2 BASIC26.09■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms